| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0788 |
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| Symbol | |
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| ID | 3755744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 807943 |
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| End bp | 810543 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637781653 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_387284 |
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| Protein GI | 78355835 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.940486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCGTT GTAGCACAGT ATACCAAGGC CGCCGGGCTT TCAAGGTGCG GCTCTCTTCC
CAAAGTGCGG CGGGCAATGT ATACATGCTG CCCATGAACC CCCATACGCC TTTTCATGAA
GAAACACGCA TCAGGCTCAC CCGCCGTGAC CTCATCAGGT ACGAGAATCT GCTTCGCGAT
TCCCTTTCGC GGGTTATCTC CTTCAAGTCA TACAGTCTTT TTTTTCCCCG TACTCCGGTT
GCCCCGGAAG CCGTATGGGA GCCGCAGGAC CGCAAGCTGC TGATTCCGCT CATTCTTAAA
GGAGAGCTGC TGGGAATTTT TGTGGCGCGC GGCGTGGGCG GCAGACCGGC ACGCACGTTG
CTGGCGGCGT ATCCCGCCGT TGCCACACTG TGTCTGGAAA ATCTGCTGCT GTACAAGATG
AGCATCACAG ACCCGTCCAC CGGACTTGCA TCGTTGCCTT ATATGCTGGA TGTGGCCGCG
CGCGAGGTGG GGCTTATCCG CGAGTGCTTC CGCCCCGGTG CAGACAGCCG GTGCGATGTG
GCCACGCTGG GGCACCGTGC GTGCATGGGG CTGGTTGTGC TCCGTTTCAG TTCCATGCCT
GCCGTTGTGC GTGATTGCGG GTATCTGTTT GCCGAGCAGC TGTGCGCACT GCTGGCGGAC
GAACTGCAGG CCGTGGTGCC GGAGCAGGCT TTTGCCGCGC GTACCGGTGA CAGTGAGATG
GCTGTTTTTT TGCCCACGGC CACGCCGCGG GTATGCCGCA AGGTGGCGGC GGAAGCTGTG
CGCAAACTGC GCGCCGTTTC GCTGCTGCAC GAGCTGCGTG ACGAGGAGAT AGGCGTAAGC
GTGGCGGCGG GGTTTGCCAA CTATCCGCAG GATATGAACG GAGCGCAGTT TGAACGCCCC
GAGGCCGAGC AGGCCCGCAT GCTGCTGCGC AAGGCGCGCA CGGCCGCTTC GGTGGCGGTG
GAGGATGCGC CAGGCACCAT GCAGCAGGTC ATGGGGTTTG GTCGGATACT GGCCGAAGGC
GGCAGGGTGC AGGAAGTGCT GCCCATGAAC AGGGTGGTCA TCAGTCTGGG GGCAGCCATG
GATGCGCGGG AAGGCCAGCG TTTTTCCATA TGGAGCCATG TGCGTCACGC ATCGGGCATA
TCCGGCGGGG CGGGCGTGTC CGGCGCGCAG GATGAAAAAC CCGCGGCACC GTCGGTTGAT
CCCGCGGTGC CTCCTCTGCC CTCCGGAGCG CGGCAGGAAC ACACCCTTAT GTACAAGGGC
GAGCTGGTGA TCATGGAAGT GCGTGAAAAC AGTTCGCTGG CCGAGGTGAT GCATCTGGGC
GACCCTGCAT GGAGCATAGC ACAGGGCGAC CGCCTGACGC TGCTGCCGGA AGATAAAGAC
GTGTCGGCTG CGGGAGCGGT GTCTGACGAT GGTGCGGCGG CTTCGGCCGA CCCGCTTACC
GGACTGCTGC GGCACAGGGA TTTTCTGGCC CGCTGGACAC GCGACAGAGA CCTGTGTTCC
GGCTACACGC TGGCTCTTAT GCGCCTTACA GGCGAATCGC GGCAGCATGG CGACCGCTCG
CCCCACGCCG AACAGCTGAT GGCTCAGGCT GCCGAGGCAT GCAGGGCCCG TCTGGCCGAG
CTGCAGCCCG CAGGCGGCGA TGCCGTTTCG TTCGGCGGAC GATACGGTCT GAACAGTCTC
ATCCATTTTC ATCCTGATGT GCCGGTGGAC AAGGTGTACG ACTGCTACAC GGAACTGTGC
GAGCATCTGG AGCGCAAGCT GCATATCGAA GCAGCCGTGG GTATTGCGCG GCATCCCTAC
CTTAATTTCC GCAAGCCGGA CAGTCTGGAA AACTGCCAGA AGGCACTGGA ATACGCTATG
CTGATGGAAA AGCCCCGTGT GGGCGTCATC GATACATGGG CGCTTAACAT CAGTGCCGAC
AAGCTGTTCA GTCAGGGCGA TACCTTTGCC GCCATCGAAG AGTACAAGCT GGCGCTGCTG
GCCGATGAGA ATAATACCAT GGCATGGAAT TCTCTCGGGG TGTGCATGGC CGGTCTGGGC
AGACACTCCG AGGCGCGCAG GCTTTTCGGC GAGGCGTTGC AGCGCGACAG GCGCGATGTG
ATGACACTGT ATAATCTGGG TCATGTGTGT CAGAACATGG GCGAATATGA CGAAGCCAGA
CAATATTACC GCAAATGTCT GAAATACGAT AAAGAGCACG TTTTTGCCCT GTTGCGTCTG
GGGCAGATGG CAGAGCAGGA AAAGAAATTC GGTCCGGCGC GGCAGTATTA CAACAGGGCG
GCCAGACTGG ACGGCGCGCA GGCGCTTACG TGGCGCAACC TTGCGCGGCT GTGCATGCGT
CAGGGCCGCC CCGATGAGGC CCGTGAACAC CTGCATCAGG CTCTTATCCA TAATCCGCAG
GACGCCATTT CGCTGCAGTT GCTGGCGCGG CTGTATCTGG AAGGCGGAGA TGATCCGGAA
GTCGCATCGG TGCTGGCACG TCAGGCCGTG GCCCTGCGGC CTGAACTGAA AGCCGGCTGG
CTGGATCTGG CCCGTGCTCT GGAAGCCACA GGAAGGCAGC GCGAAGCAGC AGAAGCACTC
AGCCGGGCCG CCGGGCTGTA G
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| Protein sequence | MMRCSTVYQG RRAFKVRLSS QSAAGNVYML PMNPHTPFHE ETRIRLTRRD LIRYENLLRD
SLSRVISFKS YSLFFPRTPV APEAVWEPQD RKLLIPLILK GELLGIFVAR GVGGRPARTL
LAAYPAVATL CLENLLLYKM SITDPSTGLA SLPYMLDVAA REVGLIRECF RPGADSRCDV
ATLGHRACMG LVVLRFSSMP AVVRDCGYLF AEQLCALLAD ELQAVVPEQA FAARTGDSEM
AVFLPTATPR VCRKVAAEAV RKLRAVSLLH ELRDEEIGVS VAAGFANYPQ DMNGAQFERP
EAEQARMLLR KARTAASVAV EDAPGTMQQV MGFGRILAEG GRVQEVLPMN RVVISLGAAM
DAREGQRFSI WSHVRHASGI SGGAGVSGAQ DEKPAAPSVD PAVPPLPSGA RQEHTLMYKG
ELVIMEVREN SSLAEVMHLG DPAWSIAQGD RLTLLPEDKD VSAAGAVSDD GAAASADPLT
GLLRHRDFLA RWTRDRDLCS GYTLALMRLT GESRQHGDRS PHAEQLMAQA AEACRARLAE
LQPAGGDAVS FGGRYGLNSL IHFHPDVPVD KVYDCYTELC EHLERKLHIE AAVGIARHPY
LNFRKPDSLE NCQKALEYAM LMEKPRVGVI DTWALNISAD KLFSQGDTFA AIEEYKLALL
ADENNTMAWN SLGVCMAGLG RHSEARRLFG EALQRDRRDV MTLYNLGHVC QNMGEYDEAR
QYYRKCLKYD KEHVFALLRL GQMAEQEKKF GPARQYYNRA ARLDGAQALT WRNLARLCMR
QGRPDEAREH LHQALIHNPQ DAISLQLLAR LYLEGGDDPE VASVLARQAV ALRPELKAGW
LDLARALEAT GRQREAAEAL SRAAGL
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