| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0758 |
|---|
| Symbol | |
|---|
| ID | 3755792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 783280 |
|---|
| End bp | 785682 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637781623 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_387254 |
|---|
| Protein GI | 78355805 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGT CAATTTTATG TCCAGGAGCA AGGATGGGAA TTTTTCAACA CCCTGTTACC
GATGATGCGC TGTATCAGGC GGTGCAGCTG CCTTCTTTTT CTTATTATAT GGTGGCCAGC
ACACGCATGC AGTCTGTTAT GGAGCTGGTG CAGCCGCTTG TGGTGCGTAC CGTTATTCTG
GCAGCCGGTC TGTGGGTGGT GGGCATTTTT CTGACAATCG TGGTCTACAG GCATTCGGTC
AGTCAGTACG ATCTGGCTCT GTCCGAACTG CAGTGTACGC AGCGTGACGA ACTGGCAAAT
CTGTTCAAGG CGCTTGTCAC GGACGTGCAG GCTGCCCCTG AACCGGCAAC GGCCATGGAA
GTTTTTCTGC GGCGTCTTTG CGAGCGGACG GGGTTTGAAC TGGGAGCCGT GTACCTGCCG
GACAAGCAGG AACGTTACCG CTTTGTGATT TATCAGAGTG ATTCTTTTCA CCCCATTGCC
AGAAATCCGG GCAAAGGCAT GTCCGCACCG GACGTGCTGC GTGCGCATCT GCTGGGGCTT
ATGCAGCACC CTGTGTTTTT GCAGGCAGAA CAGAACGTGG TTGTGCCGGA CATGAGCGTT
GATGAGCGGT TTGCGGAATT TTATCCGGCC GGGGAGGGCT CGCCCGCGCA GCCGCTGCTG
AAAACTGTAA TCAGGGGAGC CTGCGTTTCC CGTGTGCGCC GTGCTTCCGT GGGGCATGTG
CATGTCGGTC TGTTCTCTCT TGTATCGCTG GAAAAAAGCA GTGATGTCGC CGGACTGCTT
GATGAAGTTA TGCCGCTGCT GGGGCCGGTG GCTGAGAGTA AGCTTGCAGA GGTGCACCTG
CGCGAACAGG AAATGCTCTT CCGCAACCTG TATGACAGGT CGGCTCTGGT GCAGGTGGTG
GTCAATCCTG AAACAGGCAC GGTGCTGGAT GCCAACATGG CGGCGTGCGA ATTTTACGGC
TATCCGCACG AAGTGTTTGT GACACAGACC CTGTATGACC TGTGGCAGGC TCCACGGGAC
GATATTGACG CCGTCATGTC CGCTTCCACA GAACTGTACA CCGGTTTGCA CATACAGAAG
CATATTCTGG CCGGCGGCGA CCTGAAGGAT GTGGAGGCGT ACATGGGCAG GGTACCGTGG
AAGGGGCAGC ATGCCCTGCT TTGCGCCGTG TTCGACCGTT CCGGCATAAA GAAGATGGAG
GCGGCTCTGC TGCGCAGCGA GCAGCAGCTT GCCATGCTGA TGGAAAAGCT GCCTCTTGCG
CTGGCGCTGC TGGATGAGAC CGGAACCATA CGGCAGGTGA ACGGGGCTTT TGTAGCGCTT
ACAGGCCGCA CGGCGATTTC CTGTACCGGC AGGTATCTGC ATGAGCTGGG GCTGGAAAGT
CTGCATGAGG CGTCATGTCC TGTTGTGCAG GATGCCCTGC TGCCGGCCGG CAGAGAGCCG
CAGGAGCTGC TTCTTGTCAC GTTGCAGGGT GAAGAACGCC ATGTGCTTGT ACATACCACC
CGTCTGCAAA TGCACGAGGA GGGCACACGG TATGCGGCGT TCATAGTGGA TATGACCGAA
CGGCGCAGGC TGGACGACCT TGTGGTGCAA AGTGAAAAAA TGGCCTCCGT CGGGGGGCTT
GCCGCGGGCA TGGCGCACGA GATCAATAAC CCGCTGGGCG GCATAATGCA GGGAGCGCAG
AACATCATCA GGCGGCTTGA TCCGCACCGG GAGGCGAACC GTGCCGCGGC ACAGGCGTGC
GGGTGTCCGC TCGAAGCCAT CAGGGCATAC CTTGAGCAGC GCGGCATCCT GCGGTTTATC
GGCGGCATAG AGGATTCTGC CCGCCGCGCT GCCCGTATAA CGTCAAATAT GCTTGAATTC
AGCCGGCCTT GTGCCGGAGA ATGGCGCGAG GCACGCCTTG AGCATATTCT GGATGTGGCG
CTGGAGCTGG CAGCTAATGA CTATGATCTG AAAAAACGTT ATGACTTCAG AACAATCCGG
ATCGTCAGAG ACTATTCGCC CGATGTTCCT GCCGTGCGCT GCATCGTTTC CGAAGTGGAA
CAGGTGGCGC TCAACTTGCT GCGTAATGCC GCACAGGCCA TGGCGGAAGC CGCCACAGAG
GCTCCTGCCA TCACGCTGCG CACACGGGTG GACGGCGAAT ACGCTGTTTT TGAGGTGGAG
GACAACGGGC CCGGCATGAG CAGAGAAGTG GCCCGCCGCG TTTTTGAGCC GTTTTTCACC
ACCAGAGAAC CGGGGCGCGG CACAGGTCTC GGGTTGTCTG TGTCGTATTT TATCATTACC
GCCACTCACA AGGGGGCGAT AGCAGTGCAG GCCCGGCCCG ACCGCGGAAC AGCATTTGTG
GTGCGCCTGC CCTTGCGCAG TGCAGAGTGT CTGCACGAAG AAAAACCTGC CGTGGAGAAC
TGA
|
|---|
| Protein sequence | MTKSILCPGA RMGIFQHPVT DDALYQAVQL PSFSYYMVAS TRMQSVMELV QPLVVRTVIL
AAGLWVVGIF LTIVVYRHSV SQYDLALSEL QCTQRDELAN LFKALVTDVQ AAPEPATAME
VFLRRLCERT GFELGAVYLP DKQERYRFVI YQSDSFHPIA RNPGKGMSAP DVLRAHLLGL
MQHPVFLQAE QNVVVPDMSV DERFAEFYPA GEGSPAQPLL KTVIRGACVS RVRRASVGHV
HVGLFSLVSL EKSSDVAGLL DEVMPLLGPV AESKLAEVHL REQEMLFRNL YDRSALVQVV
VNPETGTVLD ANMAACEFYG YPHEVFVTQT LYDLWQAPRD DIDAVMSAST ELYTGLHIQK
HILAGGDLKD VEAYMGRVPW KGQHALLCAV FDRSGIKKME AALLRSEQQL AMLMEKLPLA
LALLDETGTI RQVNGAFVAL TGRTAISCTG RYLHELGLES LHEASCPVVQ DALLPAGREP
QELLLVTLQG EERHVLVHTT RLQMHEEGTR YAAFIVDMTE RRRLDDLVVQ SEKMASVGGL
AAGMAHEINN PLGGIMQGAQ NIIRRLDPHR EANRAAAQAC GCPLEAIRAY LEQRGILRFI
GGIEDSARRA ARITSNMLEF SRPCAGEWRE ARLEHILDVA LELAANDYDL KKRYDFRTIR
IVRDYSPDVP AVRCIVSEVE QVALNLLRNA AQAMAEAATE APAITLRTRV DGEYAVFEVE
DNGPGMSREV ARRVFEPFFT TREPGRGTGL GLSVSYFIIT ATHKGAIAVQ ARPDRGTAFV
VRLPLRSAEC LHEEKPAVEN
|
|---|
| |