Gene Dde_0553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0553 
Symbol 
ID3756462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp572745 
End bp574214 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content61% 
IMG OID637781414 
Productputative transcriptional regulator 
Protein accessionYP_387049 
Protein GI78355600 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCATTC CCAAAACAGC TTATGCAGTC ATCGCCGCCA CTCTGTGCAT CGTGCTGCTG 
TTCATTGTGT TCAACACCGC CATTGTCGCA CGACTGGTAA GCGGCGTGGC AGTAGACTAC
TTTGTCGATG CCGCGCGGCA GTCGCTGCGC GACACACGCA CCCAGATGAC GGCCATGCTG
TCCGACAGCA CCCCGCTGGA CGACAACGCC GAGTCTGAAA TCCTGCGCGA AATGCTGCGG
GTCAGCGGTG CCACCGGCAT TGTGGTCTTC AACACTGACG GCAGCGGAGT GTATCTGGAT
ACGCTTACCG GCAGAAAAGC CCGCGTACCC GCACCGCTGG CTCCGCAGTC CGGCACGGCG
GAACAGACTG AAAACACCGC CCCCGCACAA TCACGGCCCG GTGCCATAGC CGGCAACAGC
ACCGGACAAC CGGCCGCGGA ATCGCTCAGC CCGGCTCTTG CCCGATGGCT GCGTGCCGGT
TTGGACACAT CGCTGGAGGT TGCCCCCGGC CTGCCCCTGC TGGAAATATC GCCGGAAACG
GACGGCGGGC GTCTGCTGTA CATTCTGGCG CAGGCCGCCG GAAGGACAGC TTTTCTGCTG
TACACGCCGG AAGCGCTCAT CGGCAGTGTG GTGCAGCATT TTCCGCATGC CGAAGCCGTG
GTATCTGTCA ACGGAATCAT TCTGGCAGCC AGCGGCGGTT TCAGTCAGGA ACTGGAAAAA
GCCCGGCAGG AAGAAAAGCA GCTCACGCTC AAGGCACTGA CAGGACGACG CGAAGGCACC
TACGGCATCA CTTCCGAAAC GCTTGTCTCC TCCAAAGCCA CAGGCCTTGC CGTGACCATG
CTGGCACGGG AGGTCAACCT GCTTTCCATG CTGCTGCGCG ACACGCGGTT TCTGGTGGCC
ACAGCCGCCC TGCTGGCCGC GCTGGCGGCC ATCATCATCG GCTACACGTT GTATGCGGGC
AAAATGCGCA AGGCGTACAG GCCCAACAAA CCGCTGTCAT CCCAGCAGGT ACGGCGCCTG
CTGCGGCAGG GCGAAGGCGA CCATGTGGAG TTCAAATCAA CGCTGCGCTT TAACCTGAAA
AGCGGTAAAA ATGATAAAAG TATAGAGCTT GCCGTTCTGA AAGGCATCAC CGCATTTCTG
AACACAGCCG GAGGCACCCT GCTGGTAGGC GTGAGCGACG AAGGCGAGGT GCTGGGCATG
GACCCGGACG GCTTCCGCAA CGACGACCAT GCCCTGCGAC ATATCAGCAA TCTGGTGGCG
GAACATATCG GCATACGGCA TATCAACGCC ATAAGCCTGC ATGCACTGAC GCTGGACGGC
AAAACCGTAC TGGCTGCGGT GTGCCGCCAG GCCACCGACC CCGCCTTTCT GCGTCACAAA
GACGACGAGA TGTTTCTTGT ACGGCAGGGA CCGGGCAACA GACAGCTGAG TTTCAGCGAG
TTCTGGCACA TCAGCCGCAA GTTCCGCTGA
 
Protein sequence
MRIPKTAYAV IAATLCIVLL FIVFNTAIVA RLVSGVAVDY FVDAARQSLR DTRTQMTAML 
SDSTPLDDNA ESEILREMLR VSGATGIVVF NTDGSGVYLD TLTGRKARVP APLAPQSGTA
EQTENTAPAQ SRPGAIAGNS TGQPAAESLS PALARWLRAG LDTSLEVAPG LPLLEISPET
DGGRLLYILA QAAGRTAFLL YTPEALIGSV VQHFPHAEAV VSVNGIILAA SGGFSQELEK
ARQEEKQLTL KALTGRREGT YGITSETLVS SKATGLAVTM LAREVNLLSM LLRDTRFLVA
TAALLAALAA IIIGYTLYAG KMRKAYRPNK PLSSQQVRRL LRQGEGDHVE FKSTLRFNLK
SGKNDKSIEL AVLKGITAFL NTAGGTLLVG VSDEGEVLGM DPDGFRNDDH ALRHISNLVA
EHIGIRHINA ISLHALTLDG KTVLAAVCRQ ATDPAFLRHK DDEMFLVRQG PGNRQLSFSE
FWHISRKFR