Gene Dde_0550 details

Gene Information

• Locus tag: Dde_0550
• ID: 3756497
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. G20
• Kingdom: Bacteria
• Replicon accession: NC_007519
• Strand: +
• Start bp: 569325
• End bp: 571112
• Gene Length: 1788 bp
• Protein Length: 595 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637781411
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_387046
• Protein GI: 78355597
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCCGCA CCGCAGATGA GCACTCACAG AAAACCGGCA GGTCCGGTGC TGCGCAGGGC 
TGTGCCCTTG CCGCTGCCCT GTGGGAAAAA GAACAGCTTT TCAGAGTGCT TCTGGAATAC 
AGTGCCGACT GTGAAATCTG GATTGATGCC TGCGGCGTGG TGCGTTTTGT CTCGCCGTCA 
TTTGCAAGCA TCACCGGATA TACCCCTGAA TGCCTGTACA GAAATCCGGA CTACCTTGCA 
GCCATAATGG TGCAGAGCGA TCTGCCCGCA TTCCGCGCGC AGGAGCGGAT TCTGGCGGAA 
CGCGGCGGCT CTTTTGACGT GGAGGTGCGC ATACGCACGG CTTCCGGCAG GGAATGCTGG 
GTGCTGTGCA TATGCCGGAG CATCACCGAT GATGAGGGAC GCCCGCAGGG CCGGAGACTT 
ACCTGCCGTG ATGTGACGCG CCGCCGCCTG CTTGCCATGC AGCTGCAGCA TCAGGCCGGT 
CACGACCCGC TGACAGGACT GCCCAACCGG TCTCTTTTTC TTGAAAAACT TGATGCGCGT 
GTGAATGGTG GCCGCGCAGC GCGTGACGGC GGCGCATCTG TTGTGATGAT AGATGTGGAC 
CGCTTCAAGC AGATAAACGA TGTGCTGGGT CACGAGGCGG GAGACGGCGT GCTGCGCGTG 
GTGGCCGACA GGCTGCGGGG TATTCTGGGC GGCAATGACG CTCTGTGCCG TCTGGGCGGT 
GATGAATTCT GCCTGCTGCT GGCCGGCGGC GGCCGTGCCG AAGAAGTGCT GGCACGGGTA 
CAGCAGATAC AGCAGCGGCT CATGGACTCT GTTGACACGG GGGGCAGGCG GCTGCATCTG 
ACGGTAAGTG TGGGCGTGGC CACCCACCGG CCGGGGCAGA ACGCGCCGGA AGACATGATG 
CGCAACGGCG GCATTGCCCT GCAGCATGCC AAACGTGCGG GCGGCGGCGG ACTGGAGGTG 
TTCAGCGACT GGATGCTGGA AAGTGCGCTC AACCATGCCC GTCTGGAAAT GGAACTGCAC 
CATGCGCTGA AAGACAACGC CTTTCATCTT GAGTTCCAGC CTCTTGTCGA TCTGCATTCT 
GGGCGTCCCG TACGGGTGGA GGCTCTGGCC CGCTGGGATC ATCCTCAGCG TGGGGCCGTT 
TCGCCCGCTG ATTTCATTCC CGTTCTGGAA GAAACCGGTC AGATTCTGCG TCTGGGCAGC 
TGGGTGCTGG AAAACGCCTG CATGGCTGCC GCACGCTGGC AGCGCAGGCA TCCTGAGCTG 
CGGTCCGTCG GCGTCAGTGT GAATCTTTCG GCCCGGCAGC TTGCACAGCC TGCGCTGGTG 
GATCAGGTGG CGGCGGTGCT TTCCCGCTCC GGACTGGAAC CGGCCAGCCT GAAGCTGGAG 
GTGACGGAAA CCATGCTCAT GGACAATCCG GAACTGTCCA ATCTGGTGCT TCGCAGGCTG 
AAGGATCTGG GCGTTTTTCT GGCCATCGAC GATTTCGGCA CAGGGTATTC TTCACTGGCC 
TATCTGCAGA GTTTTCCCAT TGATACGCTG AAGATCGACA AGTCTTTCGT CATGGGCATG 
ACCAGCGACC CCGGCAAATT CAACATTGTG AAAGCGGTTA CCGCGTTGGC GCATAGTCTG 
GGGCTGGATG TGGTGGCCGA AGGAGTGGAG GAACAGGAAC AGCGCATCAT GCTGCATGCC 
GTGGGCTGCG AGTACGCGCA AGGGTTTCTG TTTGCCCGTC CTGTGCCGGA AAAAGACCTT 
GCCGCGCAGC TCGGCAGCCT GCTGCGCAGT TCCTGCGATC CTGCCTGA 

 

Protein sequence

MGRTADEHSQ KTGRSGAAQG CALAAALWEK EQLFRVLLEY SADCEIWIDA CGVVRFVSPS 
FASITGYTPE CLYRNPDYLA AIMVQSDLPA FRAQERILAE RGGSFDVEVR IRTASGRECW 
VLCICRSITD DEGRPQGRRL TCRDVTRRRL LAMQLQHQAG HDPLTGLPNR SLFLEKLDAR 
VNGGRAARDG GASVVMIDVD RFKQINDVLG HEAGDGVLRV VADRLRGILG GNDALCRLGG 
DEFCLLLAGG GRAEEVLARV QQIQQRLMDS VDTGGRRLHL TVSVGVATHR PGQNAPEDMM 
RNGGIALQHA KRAGGGGLEV FSDWMLESAL NHARLEMELH HALKDNAFHL EFQPLVDLHS 
GRPVRVEALA RWDHPQRGAV SPADFIPVLE ETGQILRLGS WVLENACMAA ARWQRRHPEL 
RSVGVSVNLS ARQLAQPALV DQVAAVLSRS GLEPASLKLE VTETMLMDNP ELSNLVLRRL 
KDLGVFLAID DFGTGYSSLA YLQSFPIDTL KIDKSFVMGM TSDPGKFNIV KAVTALAHSL 
GLDVVAEGVE EQEQRIMLHA VGCEYAQGFL FARPVPEKDL AAQLGSLLRS SCDPA