| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0540 |
|---|
| Symbol | |
|---|
| ID | 3756486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 551514 |
|---|
| End bp | 552779 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637781400 |
|---|
| Product | phenylacetate-coenzyme A ligase, putative |
|---|
| Protein accession | YP_387036 |
|---|
| Protein GI | 78355587 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1541] Coenzyme F390 synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000138329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTA AAGACAGAAC AGAAGGCATA TACAGCCGTC GTGAAGTGCT GGACGAGAGC
GAGCGCAAGC AATATTACCT CATTCAACTC AAGGACCTGC TGTCCTATGC GTACCGCTAC
TCCGAAGACG TGAAAAAGCG TTTCGACCGT GCGCAGTTCA ATGTCGAAAA ATTCAAGACG
CTGACCGACC TGAAGCATAT TCCCATTCTG AAAAAGAAGG AGCTCATCTT TCTGCAGTCC
ATGGGGCCGC GGCTGGGCGG ACTGCTGACC AAAGACCTCG GCGAACTCAA GCGCGTGTTC
CTTTCGCCCG GGCCCATATT CGACCCCGAA GACCGTCAGG ACGATTACTG GGGATACACC
GAGGCTTTTT ATTCCGCAGG GTTCCGTTCG GGCGATGTTT CGCAGATAAC CTTCAACTAT
CATCTGGCGC CTGCCGGTCT GATGTTTGAA GAGCCGCTGC GCAATCTCGG CTGCGCCACC
ATACCAGCCG GACCGGGCAA CGCCGCCACC CAGCTGGAAA TCATGCAGAA GCTGCGCGTG
ACCGGCTATG TGGGCACCCC CAGCTATCTG ATGCACCTTG CCCAGAAAGC CGAGGAAAAA
GGCCTGAATC TGCGTAAGGA TCTTTTCCTT GAAGTGGCGT TTGTCACGGG TGAAAAGTTT
TCTGAAAAAA TGCGCAACCA GCTTGAGAAA AAATTCGATC TGGTCATGCG GCAGGGGTAC
GGCACGGCCG ACGTGGGCTG TGTGGGCTAC GAGTGTTATC ACAAGACCGG TCTGCACATA
GCCAACCGCG CCTATGTTGA AATATGCCAC CCTGATACCG GCATTCCGCT GAAAGACGGT
GAAGTGGGTG AAATTGTCGT CACGGCGTTT AACAAGACGT ATCCGCTTAT CCGTCTTGCC
ACGGGCGATC TTTCATACAT TGACCGTTCG CCCTGCCCCT GCGGCCGGAC AAGCCCGCGT
CTGGGCAACA TCGTCGGCCG TGTGGACACC ACCGCCCGCA TCAAGGGCAT GTTCGTGTAT
CCGCATCAGG TGGAACAGGT CATCTCGCGT TTTGAAGATA TCAAGCGCTG GCAGATAGAA
GTGACCAACC CCGGCGGTAT CGACGAAATG ACTCTGTTTA TTGAGGCGAG CAACTTCAAG
CGGGAAGACG AACTGCTGCA CGCGTTCCGC GAGCGCATCA AACTGCGGCC CGAGCTCAAG
GTGCTTGCAC CCGGTTCGCT GCCTCCGCAG ATCCGTCCCA TCGAGGACAA GAGAGTATGG
GACTAG
|
|---|
| Protein sequence | MTRKDRTEGI YSRREVLDES ERKQYYLIQL KDLLSYAYRY SEDVKKRFDR AQFNVEKFKT
LTDLKHIPIL KKKELIFLQS MGPRLGGLLT KDLGELKRVF LSPGPIFDPE DRQDDYWGYT
EAFYSAGFRS GDVSQITFNY HLAPAGLMFE EPLRNLGCAT IPAGPGNAAT QLEIMQKLRV
TGYVGTPSYL MHLAQKAEEK GLNLRKDLFL EVAFVTGEKF SEKMRNQLEK KFDLVMRQGY
GTADVGCVGY ECYHKTGLHI ANRAYVEICH PDTGIPLKDG EVGEIVVTAF NKTYPLIRLA
TGDLSYIDRS PCPCGRTSPR LGNIVGRVDT TARIKGMFVY PHQVEQVISR FEDIKRWQIE
VTNPGGIDEM TLFIEASNFK REDELLHAFR ERIKLRPELK VLAPGSLPPQ IRPIEDKRVW
D
|
|---|
| |