| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0507 |
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| Symbol | rpsA |
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| ID | 3756530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 514892 |
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| End bp | 516616 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637781367 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_387003 |
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| Protein GI | 78355554 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.762722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACCG AAACCATTGA TACCTCTCTC GATGCAGAAA TGAGCTTTGA GAGCGCCCTC
GAAAACTACC TCAGCTCCGA TTTCGGAGAT CTTGAAGAAG GTTCCATTGT AAAAGGCGAA
GTTGTCCGTG TGGACGGCGA CTACGTGCTG GTCGATGTGA ACTTCAAGTC CGAGGGTCAG
ATTGCTGCAA GCGAATTCAA GGACGCCGAA GGAAACCTTG CCATCAAGGT GGGCGACACC
GTAGACGTGT TCGTAGCCCG CAAGAACGAG ATGGAAGGCA CCATCACCTT GTCCTTTGAA
AAGGCCAAGC GCATGCAGGT CTTCGACAAG CTCGAAGAAG TACAGGAAAG TGAAGGCACA
ACCTGCGGTC GTATCATTCG CCGCATCAAA GGCGGTTACA CCGTCGATCT GGGTGGAGTG
GAAGCGTTCT TGCCCGGCTC TCATGTGGAC CTGCGCCCCG TGCCTGACAT GGACGCACTG
GTCAACCAGG AATTCGACTT CCGCGTGCTC AAGATCAACC GCCGCCGTAG CAACGTCATC
GTTTCCCGCC GCGTGTTGCT GGAAGAAGAA CGCGATTCCA AGCGTCAGGA TCTGCTGAAA
ACCCTCGAAG AGGGTCAGAT CGTTACCGGT AAGGCAAAGA ACATCACCGA ATACGGTGTG
TTCGTTGACC TTGGCGGTCT GGACGGTCTG CTGCACATCA CCGACATGTC CTGGAAGCGT
ATCCGTCATC CCAAGGAACT GGTTTCTCTG GGTCAGGAGC TGGAACTGAA GATTCTGAGC
TTTGACCGTG ACAGCCAGAA GGTTTCTCTG GGCATGAAGC AGCTGGTGAA CGACCCCTGG
GCCGATATCA CCTCCAAGTA CCCCGAAAAC GCCCGCCTGA ACGGCAAGGT GACCAATCTG
GTCGACTACG GCGCATTTGT GGAACTGGAA CCCGGCGTTG AAGGTCTGGT GCACATTTCT
GAAATGTCCT GGACCCGCAA GCTGCGTCAT CCTTCCCAGA TGGTTCGCGT CGGCGACGAA
GTGGAAGTGG TCATTCTGGG CGTTGATCCC GACAAAAAGC GCATTTCTCT GGGCATGAAG
CAGGTCAAGC CGAATCCCTG GGAAGTTGTT GCAGAAAAAT ACCCCGAAGG CACCATCCTT
GAAGGTGTCA TCAAGAACAT TACCGAATTC GGCATGTTCA TCGGTATCGA AGACGGCATC
GACGGTCTTA TCCACGTCTC CGACATCAGC TGGACCAAGA AAATCCGTCA TCCCAACGAA
CTGTACAACG TGGGCGACAC CGTGCAGGCA AAAGTGCTGA CCGTGGATCA GGAAAGCGAA
AAGTTCACCC TCGGCGTGAA GCAGCTGACC GAAGATCCGT GGAGCAAGGT GCCCGCAAAC
TACCCCGTGG GTACGCTGGT GAACGGCGTT GTTACCAACA TCACCGACTT CGGCCTCTTT
GTGGAAGTTG AAGAAGGTAT CGAAGGTCTG GTGCACGTGT CTGAAATCAG CCAGAAAAAG
GTGAAGTCTC CCTCTGAAAT GTTCAAGGAA GGCGTGACCA TTCAGGCGAA AGTCATTCAC
GTGAGCGCGG AAGAACGCCG CCTCGGTCTG TCCATCAAGC AGATCAAGGA CGACGAAGAA
CGCCGCCGTC CCAAAGAGTT CCGTTCCGGC CCTGCAGAAG CAGGCGGACA GACTCTGGGC
GACATTCTCA AGCTGAAGCT TGAAGAGGAT GCAGCAGACA ACTAG
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| Protein sequence | MTTETIDTSL DAEMSFESAL ENYLSSDFGD LEEGSIVKGE VVRVDGDYVL VDVNFKSEGQ
IAASEFKDAE GNLAIKVGDT VDVFVARKNE MEGTITLSFE KAKRMQVFDK LEEVQESEGT
TCGRIIRRIK GGYTVDLGGV EAFLPGSHVD LRPVPDMDAL VNQEFDFRVL KINRRRSNVI
VSRRVLLEEE RDSKRQDLLK TLEEGQIVTG KAKNITEYGV FVDLGGLDGL LHITDMSWKR
IRHPKELVSL GQELELKILS FDRDSQKVSL GMKQLVNDPW ADITSKYPEN ARLNGKVTNL
VDYGAFVELE PGVEGLVHIS EMSWTRKLRH PSQMVRVGDE VEVVILGVDP DKKRISLGMK
QVKPNPWEVV AEKYPEGTIL EGVIKNITEF GMFIGIEDGI DGLIHVSDIS WTKKIRHPNE
LYNVGDTVQA KVLTVDQESE KFTLGVKQLT EDPWSKVPAN YPVGTLVNGV VTNITDFGLF
VEVEEGIEGL VHVSEISQKK VKSPSEMFKE GVTIQAKVIH VSAEERRLGL SIKQIKDDEE
RRRPKEFRSG PAEAGGQTLG DILKLKLEED AADN
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