| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0401 |
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| Symbol | |
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| ID | 3756294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 394816 |
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| End bp | 397983 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637781261 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_386897 |
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| Protein GI | 78355448 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.913827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCG AACTGTTTGT AAGCCGCCCG CGGCTGGCGA TGGTCATATC ACTGGTCATC
ACCATTGCCG GTCTGGTGAC CATGTTCACC ATTCCCGTGG CGCAGTACCC TCAGATCAAC
CCTCCGGAAA TCGTGGTTTC GGCCGCGTAT CCGGGTGCCA GCGCACAGGT TCTGGCCGAT
ACCGTGGCAG CGCCCATCGA GTCGCAGGTC AACGGCGTCG AAGGCATGGT CTACATGTCG
TCCAGCAGCG ATAACAGCGG CAACTACTCA CTTACCGTGA CCTTCGGGCC TGATGTGGAC
CCCGATATAG CACAGGTCAA CGTGCAGAAC CGCGTCGCGC TGGCAGAACC TGTTCTGCCC
ACGGAAGTCA AGCAGCAGGG GGTTTCCATC CGTTCGAAAT CCTCAAACAT GCTTGCTGTA
TACTCGTTTA TATCCCCTCA GGGATCGCAT GACTCGCTCT ATCTGAGCAA CTACGTCAGC
ATAAACATCA AAGACGCGCT TACCCGCGTG AACGGCGTCA GCGACGTCAC GGTGTTCGGT
GCCAAAGACT ACAGCATGCG CATCTGGCTT GATCCGGACA GAATGGCCGC GCTCAAGGTA
AGCCCCGAGG AAGTCATTGA AGCCGTCGGC TCGCAGAACA TTCAGGCTGC CGCGGGCAGT
GTGGGCTCCG CCCCGTCTTC GCCCGACCAG CAGCTCACGT TTACCGTACG CGCCAAAGGC
CGTCTGACCA CGGTGGAAGA GTTCCGCAAC ATTGTCATCC GCAGCAACGA CACAGGCGGC
CTGCTGCGTC TGGGCGATGT GGCGCGCGTG GAGCTGGGCG CCAAGGACTA TGGCACAGAG
GCCACATTCA ACGGACACCC CGCCATTGCG CTGGGCGTGT ACCAGAGCCC CACAGCCAAC
GCTCTGGATA CCGTTGAAAA CCTGAACAAA GAACTCGACC GGCTTTCCAG ATTCTTTCCC
GAAGACGTGG AATACCGGCT GATGTACGAC ACCACGGACT ATGTGCGTGC CGCGCTGTGG
GAAATAATCC TCACCCTGCT CATCACCTTT GCACTGGTCA TGGGCGTGAC ATACATCTTC
CTGCAGGACC TGCGGGCGAC GCTCATTCCC ACGCTGACCA TCCCTGTTTC GCTGCTGGGC
ACATTTGCGG TGCTCATGGC GCTGGGGTAC AGCGCAAACA CGTTCACCCT GTTTGCGCTC
ATTCTGGCCA TCGGCGTGGT GGTGGACGAT GCCATTGTGG TGGTGGAAAA CGTACAGCGC
ATCATGTACG AGGAAAAACT GCCCGCGCCT CAGGCCACCA TCAAGGCCAT GGAACAGGTG
ACCGGGCCGG TCATCGCCAC CACGCTGGTG CTGCTGGCCG TTTTTGTGCC CATTGGCTTC
ATCTCGGGCA TCACCGGCAA CATATTCCGG CAGTTTGCGG TCACCATATC CACGTCGGTG
CTGCTGTCTT CGGTCAACGC GCTGACGCTC AGCCCCGCGC TGTGCGCCAT TCTGCTGCGG
CCGGTGCGCA TGCATCAGCA CGGACCTCTG GCCGTGTTCA ACACGGTGCT CAACAAGTGC
CGCAACAGCT TTGTTTCCGG CACGGCATGG CTCATCCGCA AGATGGTCAT CTCCGGCGTG
CTCTTTCTGG CGGTGGCCGC GGGCACGTAC TACATGATGA ACAGCATCCA CACCAGTTTT
GTTCCCGATG AAGATCAGGG CGCTCTGTTT GTGGATGTGC AGTTGCCCGA CGGAGCCGCA
AAGCCCAGAA CAGGCAATGT GATTGACGAA ATCGGCGCAC AGATGGAAAC CATGGACGGC
ATGCAGGAAG TGCTGGGCAT CAACGGCTTC AGCTTTCTGA GCGGCCGCGG GGCAAACTCC
GGTCTGCTCA TCGCCAACCT GCTCCCGTGG GACGAACGCA GCGATGCTTC GCTGCACGCA
ACGGCCCTGC AGGCCAAAAT GACCGTGGCC TTCAACGCCA TCCCCTACGC CAACACCCGC
GTACTGCTGC CGCCGGCCAT TCCCGGTCTG GGCATGGCGG GCGGCATAGA CTTCCGCGTG
CTGGCCACTC AGGGGCAAAG CCCTCAGGAA CTGGCCGCCG CAGTGCGCTC CATGCTCATC
GCGGCCAACA GCGACCCCAG AATAATGGCC GCGTTCAGCT CTTATTCCGC CAACGTGCCG
CAGGTGTTCA TCAAGCTGGA CAGGGCAAAG GCGGAAAGCA TGGGTGTGGC CGTCAGCAAC
GTATTCGCCA CGTTGCAGAC ACAGCTCGGT TCGCGGTATA TAAACGACTT CAACATGCTG
GGCCGCGCGT TTCAGGTCAA CATTCAGGCC GAAAACGACT ACCGTAATGC GGTGGACGAC
ATCAGCCGCC TGCACGTGCG CAGCGGTGAC GGACACATGG TGCCGCTGGG CAGCATAGCA
ACCATAGAGA CAGTGCTTGG ACCGCAAAGC TACTCGCGCT ACAACCAGTT CCCCTCGGCG
CAGATAATGG CCATACCTGT TCCGGGCTTC AGCTCCGGTC AGGCCATGGA CCTGTTCGAG
GAACTGGCGG ACAAAACACT GCCCGAAGGC TACACCTATG AATGGTCCGG CCAGAGCTAT
CAGGAAAAGC AGACGCAGGG ACAGACCGGC ATTCTTGTGG GACTGGCACT GCTGTTCGGC
TACCTGTTCC TTGTGGCACA GTACGAAAGC TGGACAACGC CGCTGCCTGT CATGCTCTCC
ATTCTGTTCG CCTCCGGCGG CGCGCTGGCG GGGCTGATGA TAGCAGGCAT GCCGCTGAGC
ATATACGCCC AGATAGGGCT TGTGCTGCTG GTGGGGCTGG CGGCCAAAAA CGCCATCCTC
ATCGTGGAAT TCTCGCGCGA CAAACGGCTT GAGGGCGCCT CCATCATGGA AGCCGCCACC
ACCGGCGCGC GTATCAGATT CCGTGCGGTG CTCATGACGG CGTTCTCGTT CATTCTGGGC
GTGTTCCCCA TGGTCATCGC TCAGGGTGCC GGTGCAGGCA GCCGTCAGTC CATCGGCACC
ACGGTGTTCG CGGGCATGCT GGCATCCACC ATGGTGGGGA TATTCTTCAT CCCGCCGCTG
TATGCCGCCT TTGAAACCAT GCGCACCAGA ACCATGGACT GGGTACACCG CAGGCGCGAC
GCCGCGCACG CAGAACTGAC CGATACGGGG AGCAACAATG ACGCATAA
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| Protein sequence | MIAELFVSRP RLAMVISLVI TIAGLVTMFT IPVAQYPQIN PPEIVVSAAY PGASAQVLAD
TVAAPIESQV NGVEGMVYMS SSSDNSGNYS LTVTFGPDVD PDIAQVNVQN RVALAEPVLP
TEVKQQGVSI RSKSSNMLAV YSFISPQGSH DSLYLSNYVS INIKDALTRV NGVSDVTVFG
AKDYSMRIWL DPDRMAALKV SPEEVIEAVG SQNIQAAAGS VGSAPSSPDQ QLTFTVRAKG
RLTTVEEFRN IVIRSNDTGG LLRLGDVARV ELGAKDYGTE ATFNGHPAIA LGVYQSPTAN
ALDTVENLNK ELDRLSRFFP EDVEYRLMYD TTDYVRAALW EIILTLLITF ALVMGVTYIF
LQDLRATLIP TLTIPVSLLG TFAVLMALGY SANTFTLFAL ILAIGVVVDD AIVVVENVQR
IMYEEKLPAP QATIKAMEQV TGPVIATTLV LLAVFVPIGF ISGITGNIFR QFAVTISTSV
LLSSVNALTL SPALCAILLR PVRMHQHGPL AVFNTVLNKC RNSFVSGTAW LIRKMVISGV
LFLAVAAGTY YMMNSIHTSF VPDEDQGALF VDVQLPDGAA KPRTGNVIDE IGAQMETMDG
MQEVLGINGF SFLSGRGANS GLLIANLLPW DERSDASLHA TALQAKMTVA FNAIPYANTR
VLLPPAIPGL GMAGGIDFRV LATQGQSPQE LAAAVRSMLI AANSDPRIMA AFSSYSANVP
QVFIKLDRAK AESMGVAVSN VFATLQTQLG SRYINDFNML GRAFQVNIQA ENDYRNAVDD
ISRLHVRSGD GHMVPLGSIA TIETVLGPQS YSRYNQFPSA QIMAIPVPGF SSGQAMDLFE
ELADKTLPEG YTYEWSGQSY QEKQTQGQTG ILVGLALLFG YLFLVAQYES WTTPLPVMLS
ILFASGGALA GLMIAGMPLS IYAQIGLVLL VGLAAKNAIL IVEFSRDKRL EGASIMEAAT
TGARIRFRAV LMTAFSFILG VFPMVIAQGA GAGSRQSIGT TVFAGMLAST MVGIFFIPPL
YAAFETMRTR TMDWVHRRRD AAHAELTDTG SNNDA
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