Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_0400 |
Symbol | |
ID | 3756293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 393342 |
End bp | 394826 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637781260 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_386896 |
Protein GI | 78355447 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCATA ACAAGGCATA CGCCACGCCG CGCAGAAACG GTCTGCTGGC CTCCGCTCTG CTGACCATAG TGTTTGCAGG CGGCTGCGCC GTGGGGCCGG ATTATACCGC ACCGGAACTG GATTCGCCCG CCGCATGGCG CACGGAGGAC GTTTCCGGCC TGCGGCAGAC CAGAAACGCC ACCACCGCGC TGTCGCAGTG GTGGAAAGTG CTGGAAGATC CCATGCTGGA CAGCCTGATG CAGCGCGCCG TGACCGGCAA CCTTGACCTG AAGGAAGCCC GGGCCCGCGT CCGCGCCGCA CGGGCCCGTC TGGGCATCAG CGAGGCGGAC CTGTACCCCA CGCTGGATGC CTCGGGCAGC CTGTCCACCG GCCAACAGTC TGAAAACGCG GGATACGACG GCAAGGAACG TGACCTGTAC AAAGCCGGAT TTGATGCCGG ATGGGAAATA GACATCTTCG GCGGCACGCG CCGTGCCGTT GAAGCCGCCG GAGCCGAACT GGAAGCCAGC GAAGCCGACC TGCGCGATGT ATACGTATCC ATGCTGGCGG AAATAGCATC CACCTACGTG GACGTGCGCA CCTACCAGAC CCGGCTTTCC GTGGCACAGG CCAACCTTGA AGAACAGAAA GAAACCTATG AAATCGTGGC CTCGCGCTAC GATTCCGGCC TGAGCGATGC ACTGGGTGTG CAGCAGGCGC GCTACAGCCT TGAAAGCACC CGCGCCGAGA TTCCCGCACT GCAGTCCAAG CTGGATGCCG CCATCAACCG GCTGGCATTG CTGCTGGGGC AGCAGCCCGA CACGCTGCAT GCCGAGCTTA TCACCCGGCG CCCCATACCC ATGCCACCGG TCAGTGTGGC CGTGGGCATA CCTGCAGACG CGCTGCGCAA CCGGCCCGAC ATCCGCATGG CGGAACGCAC GCTGGCAGCC AGAACCGCTG AAGTGGGGGT GGCCACGGCT GAACTGTACC CCAAATTCCG GCTGGTCGGC TCCATCGGGC TGGAATCGTT TGCCCAGAGC AGCCTGTTTG AAAGCGGCAG TCAGGTCTAC AGTTTCGGGC CGGGCATCAG CTGGCCCATT TTCCGCGCCG GAGCCATACG CCGTAATATA GATGTGGCTG AAGCCGTGCA GGAACAGTAC CTGCACCGTT ACCAGCACAC GGTGCTGGCC GCGCTGAATG AAGCCCAGAC GGCCATGACG GACTACGCCA AGGAACAGAA CCGCCGTGAC GCGCTGCAGG CAGCCACACT GGCAGCCCGC GAAGCGCTTG AACTGGCGCA GGACAAGTAC CTGAACGGCC TTGTGGACTT CAGCGACGTG CTGGAAGCCC GCCGGTCGCT GCTCTCGTAC GAAGACCAGC TGGCAGTAAG CAAGGGCGCC GTGGTGGACA GCCTGGTACG CATCTACAAA TCCATGGGCG GCGGATGGCA GACCATGGAA GCACTGCAGC AGACGGCGCA GGACGCCGGA AGCAGTCAGC GCTGA
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Protein sequence | MTHNKAYATP RRNGLLASAL LTIVFAGGCA VGPDYTAPEL DSPAAWRTED VSGLRQTRNA TTALSQWWKV LEDPMLDSLM QRAVTGNLDL KEARARVRAA RARLGISEAD LYPTLDASGS LSTGQQSENA GYDGKERDLY KAGFDAGWEI DIFGGTRRAV EAAGAELEAS EADLRDVYVS MLAEIASTYV DVRTYQTRLS VAQANLEEQK ETYEIVASRY DSGLSDALGV QQARYSLEST RAEIPALQSK LDAAINRLAL LLGQQPDTLH AELITRRPIP MPPVSVAVGI PADALRNRPD IRMAERTLAA RTAEVGVATA ELYPKFRLVG SIGLESFAQS SLFESGSQVY SFGPGISWPI FRAGAIRRNI DVAEAVQEQY LHRYQHTVLA ALNEAQTAMT DYAKEQNRRD ALQAATLAAR EALELAQDKY LNGLVDFSDV LEARRSLLSY EDQLAVSKGA VVDSLVRIYK SMGGGWQTME ALQQTAQDAG SSQR
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