Gene Dde_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0400 
Symbol 
ID3756293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp393342 
End bp394826 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content64% 
IMG OID637781260 
ProductRND efflux system, outer membrane lipoprotein, NodT 
Protein accessionYP_386896 
Protein GI78355447 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCATA ACAAGGCATA CGCCACGCCG CGCAGAAACG GTCTGCTGGC CTCCGCTCTG 
CTGACCATAG TGTTTGCAGG CGGCTGCGCC GTGGGGCCGG ATTATACCGC ACCGGAACTG
GATTCGCCCG CCGCATGGCG CACGGAGGAC GTTTCCGGCC TGCGGCAGAC CAGAAACGCC
ACCACCGCGC TGTCGCAGTG GTGGAAAGTG CTGGAAGATC CCATGCTGGA CAGCCTGATG
CAGCGCGCCG TGACCGGCAA CCTTGACCTG AAGGAAGCCC GGGCCCGCGT CCGCGCCGCA
CGGGCCCGTC TGGGCATCAG CGAGGCGGAC CTGTACCCCA CGCTGGATGC CTCGGGCAGC
CTGTCCACCG GCCAACAGTC TGAAAACGCG GGATACGACG GCAAGGAACG TGACCTGTAC
AAAGCCGGAT TTGATGCCGG ATGGGAAATA GACATCTTCG GCGGCACGCG CCGTGCCGTT
GAAGCCGCCG GAGCCGAACT GGAAGCCAGC GAAGCCGACC TGCGCGATGT ATACGTATCC
ATGCTGGCGG AAATAGCATC CACCTACGTG GACGTGCGCA CCTACCAGAC CCGGCTTTCC
GTGGCACAGG CCAACCTTGA AGAACAGAAA GAAACCTATG AAATCGTGGC CTCGCGCTAC
GATTCCGGCC TGAGCGATGC ACTGGGTGTG CAGCAGGCGC GCTACAGCCT TGAAAGCACC
CGCGCCGAGA TTCCCGCACT GCAGTCCAAG CTGGATGCCG CCATCAACCG GCTGGCATTG
CTGCTGGGGC AGCAGCCCGA CACGCTGCAT GCCGAGCTTA TCACCCGGCG CCCCATACCC
ATGCCACCGG TCAGTGTGGC CGTGGGCATA CCTGCAGACG CGCTGCGCAA CCGGCCCGAC
ATCCGCATGG CGGAACGCAC GCTGGCAGCC AGAACCGCTG AAGTGGGGGT GGCCACGGCT
GAACTGTACC CCAAATTCCG GCTGGTCGGC TCCATCGGGC TGGAATCGTT TGCCCAGAGC
AGCCTGTTTG AAAGCGGCAG TCAGGTCTAC AGTTTCGGGC CGGGCATCAG CTGGCCCATT
TTCCGCGCCG GAGCCATACG CCGTAATATA GATGTGGCTG AAGCCGTGCA GGAACAGTAC
CTGCACCGTT ACCAGCACAC GGTGCTGGCC GCGCTGAATG AAGCCCAGAC GGCCATGACG
GACTACGCCA AGGAACAGAA CCGCCGTGAC GCGCTGCAGG CAGCCACACT GGCAGCCCGC
GAAGCGCTTG AACTGGCGCA GGACAAGTAC CTGAACGGCC TTGTGGACTT CAGCGACGTG
CTGGAAGCCC GCCGGTCGCT GCTCTCGTAC GAAGACCAGC TGGCAGTAAG CAAGGGCGCC
GTGGTGGACA GCCTGGTACG CATCTACAAA TCCATGGGCG GCGGATGGCA GACCATGGAA
GCACTGCAGC AGACGGCGCA GGACGCCGGA AGCAGTCAGC GCTGA
 
Protein sequence
MTHNKAYATP RRNGLLASAL LTIVFAGGCA VGPDYTAPEL DSPAAWRTED VSGLRQTRNA 
TTALSQWWKV LEDPMLDSLM QRAVTGNLDL KEARARVRAA RARLGISEAD LYPTLDASGS
LSTGQQSENA GYDGKERDLY KAGFDAGWEI DIFGGTRRAV EAAGAELEAS EADLRDVYVS
MLAEIASTYV DVRTYQTRLS VAQANLEEQK ETYEIVASRY DSGLSDALGV QQARYSLEST
RAEIPALQSK LDAAINRLAL LLGQQPDTLH AELITRRPIP MPPVSVAVGI PADALRNRPD
IRMAERTLAA RTAEVGVATA ELYPKFRLVG SIGLESFAQS SLFESGSQVY SFGPGISWPI
FRAGAIRRNI DVAEAVQEQY LHRYQHTVLA ALNEAQTAMT DYAKEQNRRD ALQAATLAAR
EALELAQDKY LNGLVDFSDV LEARRSLLSY EDQLAVSKGA VVDSLVRIYK SMGGGWQTME
ALQQTAQDAG SSQR