| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0269 |
|---|
| Symbol | |
|---|
| ID | 3755287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 254264 |
|---|
| End bp | 256468 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637781129 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_386765 |
|---|
| Protein GI | 78355316 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG CGCGCATTAT GTGCAACGGT AACCCGCCGG AAACAGACTT TCCCATGCCT
CTGACACAGC ACCAGCCTCC CGCCACGCAG CACACGGCAC GCACCCGCCC GGCGCTCATC
CGCCCGGCGT TCATCCGCGC CGCGGCTGCC GTCGGCATAT CGCTGTTTTG TACGGTAATG
CTGCTACTTG TTCTGGATGC GGCCTTTCCG CCCGACCTCT CGCGCTACAA CCGGCGTTCC
GTGCTGGTGA CCGATGCAGA GGGCAGACTG CTGCACGCTT TTCTCAGTCC CGACGGCATG
TGGCGGCTGC ACACAACACC GCATGATGTG GACAGCCGGT ACCTCGACAT GCTCAGAACC
TATGAAGACA AACGCTTCGG CATGCATCCG GGGGTGGACC CGCTGGCTGT TCTGCGGGCC
GCGGCACAGC TTGCCGTTTC CGGGCATGTG GTATCCGGTG CGTCCACACT GTCCATGCAG
GCAGCACGGC TGCTGCAGCC GCGGCCGCGT ACACTGAAAG CCAAACTGAC GGAAGCCCTG
CGCGCCATGC AGCTGCACTG GCGCTACGGC AGCAACGGGG TGCTTTCCAT CTATCTCACT
CTGGCGCCGT TCGGGTCCAA CATTGAAGGG GTGCGGGCCG CCTCGCTGGC ATATTTCGGT
AAAGAACCGC GCAGGCTGAC CACGGGAGAA GCAGCGCTGC TTGTGGCACT GCCTCAGTCC
CCCACGCAGC TGCGGCCGGA CAGAAACCCT CTGGAAGCCC GCAAAGCGAG AGATAAGATT
CTCGGCCGCA TGCACGCCGC AGGCATTATC AGCGGCAGAC AGCACACCGA AGCCCGCACG
GAATCCATTC CGGCTGTCCG CAGGCAAATG CCCGCGCTGG CGTCTGTTCT GGCCCTGAAC
ATGCGCAATG CAGCCCCCCG CCGTGAGCAC ATTGCCACCG CCCTGAGCCT GCCTGTACAG
CACGCAGCCG AAACACTGTG CCAGCGTCAT GCCCTGAGCA TGGAGCAGGG AGCCGCCACC
GCAGCCGTGG TGCTGCACCG CGCCACCCGG CAGGTGCGAG CCTATGTGGG CGGCAAAAAT
GCCGACGCTT CGCGCAATTA TCTGGACCTG CCCCGCGCAC TGCGTTCACC CGGTTCCACG
CTGAAGCCAT TCATCTACGG ACTGGCTTTC AGTGAACACA TTCTGCATCC CGAAACCCTC
ATCAGTGACG AAGCACACCG GTTCGGCGAC TTCAGCCCGC GTAATTTCCG CAGGGGGTAT
CAGGGCGCTG TAACGGTGCG CGAGGCTCTG CGTGACTCAC TGAACGTGCC CGCCGTCAGC
GTGCTGTACG CACTGGGCCC CGACAGACTG GTTGCGGCGC TGCGTAACGC CGGTGCAACG
CTGGCCGTGG AAGGCGATGC CACACTGCCC ATAGCGCTGG GCGGTGCCGG CACCACTCTG
CTGGACCTCA CAACCCTGTA TGCAGCACTG GCAGACGGCG GCACAGCGCT GCCGCCGCAG
TTTGTTCCCG CCGTCCTGCC CGCCCCGCAG CAGGGATTCC GGCTGATGGA CAGTGCTGCG
GCATGGCAGG TCATTGATAT TCTGAAAGAC TCGCCGAGGC CGCAGGGCTA TCTGTCAGCC
GCGGCCGGCG GCAGACCTGT CGCCTTCAAA ACGGGCACGT CATACGGATA CCGCGACGCG
TGGGCCGTGG GTGCTTCTCC TGACTGGGTG GTGGGGGTGT GGACAGGCAG GCCCGACGGC
AGACCCCGCC CCGGCGCAGT GGGGCGCACC GCCGCTGTAC CGCTGCTGCT TGATATTTTC
GGCAGGTTGC CGCCGGATAC TGGCCCGTGG CCTTCTCCCC CGGCAGGGGT GCTGGATGTG
CGCGACAACC GCAGGCTGCC TACGGGGCTG CAGCGCTTTG TGCCGGGCAG CGGCACGGGC
CTGCCTGTAC TGGCCGGCGA GCCTCCGCGC ATACTGCACC CGCAGCAGGG AGCCACTGTG
GAATCACTGG GGCAGCAGGC AGGAGAAGGC ATAGCTCTGC GCGCATCGGG CGGCACCGCC
CCGCTGCGCT GGGTTGTCAA CGGACTGCCC CTGCCCGAAG ACCAGCATTA CTGGCTGCCG
GACAGTGAAG GCTTTGCCCG GCTGACGCTG GTCGATGCGG CAGGACGCAG CGCCACAGTG
CAGATCCGCA TCATTCTGCC GCAGCAGCCG GCACTCGCCC CGTAA
|
|---|
| Protein sequence | MPPARIMCNG NPPETDFPMP LTQHQPPATQ HTARTRPALI RPAFIRAAAA VGISLFCTVM
LLLVLDAAFP PDLSRYNRRS VLVTDAEGRL LHAFLSPDGM WRLHTTPHDV DSRYLDMLRT
YEDKRFGMHP GVDPLAVLRA AAQLAVSGHV VSGASTLSMQ AARLLQPRPR TLKAKLTEAL
RAMQLHWRYG SNGVLSIYLT LAPFGSNIEG VRAASLAYFG KEPRRLTTGE AALLVALPQS
PTQLRPDRNP LEARKARDKI LGRMHAAGII SGRQHTEART ESIPAVRRQM PALASVLALN
MRNAAPRREH IATALSLPVQ HAAETLCQRH ALSMEQGAAT AAVVLHRATR QVRAYVGGKN
ADASRNYLDL PRALRSPGST LKPFIYGLAF SEHILHPETL ISDEAHRFGD FSPRNFRRGY
QGAVTVREAL RDSLNVPAVS VLYALGPDRL VAALRNAGAT LAVEGDATLP IALGGAGTTL
LDLTTLYAAL ADGGTALPPQ FVPAVLPAPQ QGFRLMDSAA AWQVIDILKD SPRPQGYLSA
AAGGRPVAFK TGTSYGYRDA WAVGASPDWV VGVWTGRPDG RPRPGAVGRT AAVPLLLDIF
GRLPPDTGPW PSPPAGVLDV RDNRRLPTGL QRFVPGSGTG LPVLAGEPPR ILHPQQGATV
ESLGQQAGEG IALRASGGTA PLRWVVNGLP LPEDQHYWLP DSEGFARLTL VDAAGRSATV
QIRIILPQQP ALAP
|
|---|
| |