| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0257 |
|---|
| Symbol | |
|---|
| ID | 3755078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 239735 |
|---|
| End bp | 242278 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637781117 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_386753 |
|---|
| Protein GI | 78355304 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.952647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTCA GGTGGCGTCG CCTTGCCGAT ACCCCTGTGA TAATGGCATA CTGTCAGTTG
ACCTTGTGCC TGCAAACGCG AGAGGCTTTA ATGATGTATG CCGTGCACGC CCTGCTCAAA
GCCCTGTGGC GTCTGGAAAA AGAAAACGAA ACGCTGCGAA GCGCCCTGAG CGGTACGCAG
CATGCGGCGC AGGCCAGACC GCTGGGCGGG CTGCCGTATG CAGAGGTGGC TCTGCGTCCC
GGAGCCGGAG AGCAGACCGG AGGAGAGGCC GGGAAACAGG CGGACACATC TCCGGAAATG
GGCCGCGACC TGTACGTCAG CCATGTAAGC GACGCGCTGC TGGAACTGGC CGGCATGACC
GCGCCCCTGA AAGACCCCGC AGACATATTC ACGGCCGTGC CGTGGCAGCT TGCCCTGCTG
TGCACGCAAA GCACCCCCGT GCTGGTCAGC ATTCCCCTGC GCATCCGCAC CGCACAAGGG
GGCTCGCTGC CGGTGCTGGC CATGCCGCTT CCGCTGCCGC ATCACGACTC CGCGGCGTCC
CGGACCTCAT GGCGGTTCAT GGTGCTGCCG GTTGACGGTG TTCCCTGCGA AGACGGTATC
AACCTGACCC GCGCCATGGC AGACAACATG ATAGACATGC TGTGGGCAAA GGACACCAAG
GGCCGTTACC TTTTCGCCAA CAGAGCCATC TGCGAAAAAC TGCTCTGCTG CGACGGCATA
GACCCGCTGG GACGCGATGA TATCTATTTC GCACGGCGCC AGCGCGCGCT GGGCTGGCAG
CACACCTTCG GGGAACTGTG CCTCAACAGC GATGACATCG TACTGCTGTC GCAAAAGCCC
GGCAGATTTG TGGAAGACGG TCTGGTACAG AACAAGTATC TGGCTCTGGA AGTGCAGAAA
TCGCCGCTGT ACGATCCGCG GGGTGTGCTG ATAGGCACCG TGGGCACAGG CAGGGACATA
ACACGCCAGA AAGAGGCGGA AGAAGCCCTG CGGCGCAGCG AGCACCGCTT CGGCATGGTG
CTGCGCGCCA CCAGCGACAT CATATGGGCC TATGACATCG CCAAAGACAC CATGACCTGC
GGCAAGATGG ATTCGCCCGA CCCGTTCCGC GCCATGCAGG AATGCCATTG TCTGCCGGTG
CACCATGAAG AACTCAAAGA CATCAAAGAC CATGTGAGCC GTTTTTTCAG AGAAGGCGGC
GACAACCTGC AGCATGAGTT CAATCTTACC GCACACGACG GAAATACCAT ATGGCTGCTT
TCACGCGGGC GTGTCATGGA ATTTGACGAA AAAGGCGCGC CGCTGCTGGC CGTGGGGTCG
CATACCGACA TCACGGAACT GAAAACAGCA CAGGTGGCCG CAGAAGCCGC GGCAAAAGCC
AAAAGCGCCT TTCTGGCCAC CATGAGCCAT GAAATACGCA CCCCCCTCAA CGGCGTACTG
GGCATGCTCC AGATACTCGG CAACGAAATT ACCGACCCCA AACCGCTGCG CCTGACAAGA
ACTGCGCTGG ATTCCGGGCG CAAACTGCTG GCCATCATCA ACGATATTCT GGATTTTTCC
ACCATCGACG CCGGAGCGGC ACCGCTGGAC CACGCACCTT TGCGCATCCG CGAGACCGTG
AACTCCGTGC TGGCCAACTT CAGCGAAGAA GTACGGCAGA AAGGACTCAC CCTTACGGCT
GTGGTGGACC GGGCAGTACC CGACGTGCTG GTGGGCGATG AATCACGCAT CAGACAGATT
CTGTTCAATC TTGTGGGCAA CGCCGTCAAG TTCACACGCG AAGGTTCCGT GCGCGTCGAC
GTGCTGCTGC TTACCGCCCC GGCTGACGAA GAGGCGCGGC TGCTGGTAAC GGTGGAAGAC
ACGGGCATCG GCATGGAAGC GGAAATGCTG CCGCGCATTT TCGATCCTTT TTTCCAGGTA
GACGGAACCT ACCGCCGCCG TTATCAGGGC ACCGGACTGG GGCTGGGCAT CGTACGGTCT
CTGGTAAGCA TGATGAACGG CAATATAAGC GTGGAAAGCA CCCCCGGGGT GGGCACCACC
ATCTGCTGTT CGCTGCTGCT GCGCAAGGCG CAGCAGCAAG AGCAACCGGC CGGAGGACAG
GAGCAGGAAA TACCCGCCTT GCCGCCCGCC CGCATTCTGC TGGCGGAAGA TGAAGAAGTG
AACCGCATGG CCGCCACATA TCTGCTGCGC AAAATGGGAC ACACCGTCAC CGCGGCCACC
AGCGGACTGC ATGTCATCGA ACTGCTGCAG GACCATGAAC CGGACTGCAT TCTCATGGAT
ATCCAGATGC CCGACATGGA CGGCATAGAA ACCACAAAGG TCATACGCGG CGGCCAGATA
GCAGGGCTGG AAAACATACC CATCATAGCG CTGACGGCAC ATGCCATGAA AGGGGACAAG
GAAATATTCC TTGCCGCGGG CATGGACGGC TACATTTCTA AACCCATTGA TGCGGCAGAA
CTGCAGCGCG AACTGTACAG AATACTGCAT ACCGGCAAAA ACAAAAAACC GCCGCACACC
AAGCACGACG GCACACAGGA ATAA
|
|---|
| Protein sequence | MRLRWRRLAD TPVIMAYCQL TLCLQTREAL MMYAVHALLK ALWRLEKENE TLRSALSGTQ
HAAQARPLGG LPYAEVALRP GAGEQTGGEA GKQADTSPEM GRDLYVSHVS DALLELAGMT
APLKDPADIF TAVPWQLALL CTQSTPVLVS IPLRIRTAQG GSLPVLAMPL PLPHHDSAAS
RTSWRFMVLP VDGVPCEDGI NLTRAMADNM IDMLWAKDTK GRYLFANRAI CEKLLCCDGI
DPLGRDDIYF ARRQRALGWQ HTFGELCLNS DDIVLLSQKP GRFVEDGLVQ NKYLALEVQK
SPLYDPRGVL IGTVGTGRDI TRQKEAEEAL RRSEHRFGMV LRATSDIIWA YDIAKDTMTC
GKMDSPDPFR AMQECHCLPV HHEELKDIKD HVSRFFREGG DNLQHEFNLT AHDGNTIWLL
SRGRVMEFDE KGAPLLAVGS HTDITELKTA QVAAEAAAKA KSAFLATMSH EIRTPLNGVL
GMLQILGNEI TDPKPLRLTR TALDSGRKLL AIINDILDFS TIDAGAAPLD HAPLRIRETV
NSVLANFSEE VRQKGLTLTA VVDRAVPDVL VGDESRIRQI LFNLVGNAVK FTREGSVRVD
VLLLTAPADE EARLLVTVED TGIGMEAEML PRIFDPFFQV DGTYRRRYQG TGLGLGIVRS
LVSMMNGNIS VESTPGVGTT ICCSLLLRKA QQQEQPAGGQ EQEIPALPPA RILLAEDEEV
NRMAATYLLR KMGHTVTAAT SGLHVIELLQ DHEPDCILMD IQMPDMDGIE TTKVIRGGQI
AGLENIPIIA LTAHAMKGDK EIFLAAGMDG YISKPIDAAE LQRELYRILH TGKNKKPPHT
KHDGTQE
|
|---|
| |