| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0175 |
|---|
| Symbol | |
|---|
| ID | 3755346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 160021 |
|---|
| End bp | 161682 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637781034 |
|---|
| Product | transglycosylase SLT domain-containing protein |
|---|
| Protein accession | YP_386671 |
|---|
| Protein GI | 78355222 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTCG CCTTTCCGAC GCAAAACAGG AGTTCGGCGC ACGGCATAAG GGATCATTAC
CTACATGCCG CCAATAGAAA AGTCAAACGG ATGGCCACCG GAAAAGGCCC CGCAACCTGC
TTCGGACGGG CTCTCCTCTG TACGTTTCTC GCCTCGCATC CCGTCCGGAC ACGTCACCTT
CTCATGAAAC AATCACATAC ACGCATGGGC AAGCGCCTGC TCGCCGCACT GTCAGTGACG
GTGCTGAGCA TCCTGCTCTC ATGCTCCGAG CGCGAAAAGC AGCCCGTGCA GCCCGACAAC
ACGCTGCGCG TGGTGGCCCC GCACAGGGAA CGTGTTTCCA GCGCTCTGTC CCCTTACGGC
CCGGGTTACG AACATGAACT TGTTATGCAT TTTGCCCGCC AGGCCGGCTA TGATATTGAA
TGGATCGAAG CTTCCACCAT GGAAGACGCC CTGCAGGCGC TGGCCGAAAG ACGCGGCGAC
CTCATTGTGG GATACGGCGG CGACATAACC GCCGCTCCGC AGACAACAAC CCGCCACAAC
GACGCACCGC CGCCGTCACC CGTGGTGTCC GGCCCGGCGT ACGGCCATTA CAACCCGGTG
CTGGTGCACA GCACGCGCCG CTACGGCCTG CGCCGCGGCA ATGAAATGTG CGACACTCCG
GTACTGGTCA CCGCAGACCC CGAACTGGAA GAAATACTGG AAGCCAAGGC CGACACGCTG
GAATGCGTGC CCATGACCGA GGCTTCACAA GACGTCTACC TGACGCCGAT TCTCCAGTCG
CTCGACACCA ACAGCGCCCG GTTCGCCATG CTGGACAATC TGGGGTACAG CCTATGGCAG
CCATTTTACC CCGGTGTGCG CACCGCCAAG GTGCTCACCC AGAAAATACC ATACCGCTGG
TTCTGGCGCG GCGACGACGC GCGCCTCAAC GAGGCTGCGC TGTCTTTCTG GGCCCAGCGC
GAAAACGACT CTCTGCTGGA CGACATGCAG GAGCGGTATT TCGGCTTTCT GCCGGAAGAG
GTGGACCGCT ATGACGTGGC ACTGCTGCGC CGCGCTCTGG AAAGCAAAGT ACCGCAGTAT
GCACAGGCCA TCGGCAACGC TGCCAGAGAA CAGAGCATCG ATCCGCTGCT GCTCATCGCC
GTCATCTATC AGGAATCACG CTTTGACGCC GACGCACGCA GCAAAACAGG TGTGCGCGGC
CTGATGATGG TAACGCAGGA CACCGCCCGG CTGCTGGGCA TCAACCGCCT TGACCCTGAG
CAGTCCATAC GGGGCGGCGC CCGCTACCTG CGCATGCTGT GGGATTCGCT GGAAGACATG
GAGCTTGACC CCTGGAACCG CTGGTTTTTC ACACTGGCGG CATACAATCA GGGGCCCGGC
CATCTGTTCG ACGCCATCAA GCTCAGCCGC GCCCGCGGCG GCACCGGCCG CACGTGGCGC
GAACTGAAAG AGGTGTATCC TCTGCTTGCA TGGGAACGCT GGTACAGCCG CACCAAGCAC
GGCTACTGTC GCGGGTTCGA GGCGGTAGCC TATGTGGAGA ACATCCGCTT CTACTATTAC
ATCCTCAACG GATTACTCAC TCTCGCGCGG CCTGAAACTG AGGATCTTGG CCCTCTTCTG
AGCGGGCTGC CCCCCGACTG GCCCGTCGGC GCCGGAACGT GA
|
|---|
| Protein sequence | MQVAFPTQNR SSAHGIRDHY LHAANRKVKR MATGKGPATC FGRALLCTFL ASHPVRTRHL
LMKQSHTRMG KRLLAALSVT VLSILLSCSE REKQPVQPDN TLRVVAPHRE RVSSALSPYG
PGYEHELVMH FARQAGYDIE WIEASTMEDA LQALAERRGD LIVGYGGDIT AAPQTTTRHN
DAPPPSPVVS GPAYGHYNPV LVHSTRRYGL RRGNEMCDTP VLVTADPELE EILEAKADTL
ECVPMTEASQ DVYLTPILQS LDTNSARFAM LDNLGYSLWQ PFYPGVRTAK VLTQKIPYRW
FWRGDDARLN EAALSFWAQR ENDSLLDDMQ ERYFGFLPEE VDRYDVALLR RALESKVPQY
AQAIGNAARE QSIDPLLLIA VIYQESRFDA DARSKTGVRG LMMVTQDTAR LLGINRLDPE
QSIRGGARYL RMLWDSLEDM ELDPWNRWFF TLAAYNQGPG HLFDAIKLSR ARGGTGRTWR
ELKEVYPLLA WERWYSRTKH GYCRGFEAVA YVENIRFYYY ILNGLLTLAR PETEDLGPLL
SGLPPDWPVG AGT
|
|---|
| |