| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0106 |
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| Symbol | |
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| ID | 3758848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 95374 |
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| End bp | 97617 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637780964 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_386602 |
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| Protein GI | 78355153 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAAAG ACCTCATCAT CGTCGAGTCT CCCGCCAAGG TGAAGACTAT CAAAAAGTTT
CTGGGCAACA AATATATGGT CCAGGCCAGT GTGGGACATA TCCGCGACCT GCCGACCAAG
GAGCTCGGCG TGGACGAGGA AAACGACTTT TCTCCTGACT ATCAGGTAAT TCAGGGAAAA
CAAAAGGTTG TTTCCGCCCT TCGCGAAGCT GCGGCAAAAG CTGATAATGT ATTTCTGGCG
CCTGACCCCG ACCGCGAGGG CGAGGCCATT GCCTGGCATG TTGCTGAAAT AATTGCCAAG
GAAAACAAAA ACATCAGCCG TATCCAGTTT AACGAGATTA CCGCCCGCGC CGTGCGCGAA
GCGCTGGAAA ACCCGCGCGA GCTGAACCGG AGTCTGTTTG ACGCACAACA GGCACGCCGC
GTGCTCGACA GACTGGTCGG TTACAAAATT TCGCCCATTC TGTGGAACAA AATAAAACGC
GGCATCTCTG CCGGCAGGGT GCAGTCGGTG GCGCTGCGGC TGATTGTAGA CCGCGAACGC
GAACGCTATG CATTCACATC GGAAGAATAC TGGGTTTTCC GGGCCAATCT GGCCGCGGAA
ACGCCCCCGC CCTTCAAGGC GGAACTTTTC AAGGTGGATG ACAAAAAACC CGCCATTGCC
AGCGCGGAGC AGGCGCAGGA ACTGGAAAAG TCCATTGAGG GCAAAGCGTT CATCGTGGAT
TCGGTGCAGG AGAAAGAACG CTCACGCAAA CCGCAGCCGC CGTTCATCAC CTCCACCCTG
CAGCAGCTGG CCAGCCAGCG GCTCGGTTTT TCCGCCAAGC GCACCATGTC GGTGGCGCAG
CGGCTGTATG AAGGCCTTGA TCTGGGCGAC ATGGGCACCA CGGCGCTCAT CACCTATATG
CGTACCGACT CCGTCCGCAT TTCGGATGAA GCCCGCGACA GCGCGCGCGA GCTTATCGCC
TCGCTGTACG GCAAAGAATA CTGCCCCGCC AAGGCGCCCG TATACAAAAC CAAAGGCTCG
GCACAGGACG CGCACGAAGC CATCCGCCCC GTTGACGTAA CGCTGACTCC GGACAAAATA
AAAGGTCTGG TGGCACCGGA ACAGTACAGC CTGTACCGCC TTATCTGGTC GCGGTTCATG
GCCTCGCAGA TGGCGCCTGC CCGCTTCCAC GACACCACGG TGCTTATCGG ATGCGGCGGC
ACGCAGTGGC GCGTAAAAGG CGAACGGCTG CTTTTTCCGG GGTATATGGC CGCCGCGCCT
GCTTCGGCCA AAGAAGCCAA TGTGGAGCTG CCCCCCATGC AGCAGGGGCA GACGCTGGAA
CTGACCCTGC TGGAAAAAGA GCAGAAGTTC ACACAGCCTC CCGCCCGCTA TTCCGAAGCC
TCTCTGGTGC GGGAGATGGA AGAAAAAGGC ATCGGCCGTC CCTCAACGTA TGCCAGCATC
ATTTCCACCA TTGTAGACCG CGACTACACC CGTCTGGAAG AGAAGCACTT TGTGCCCACC
GATCTCGGCT TTGTGGTGTG TGACATGCTT ACCAACCACT TCGGCACGCT GATGGATATC
GGCTTTACCG CGCAGATGGA AAATTCGCTG GATAAAGTGG CCGAAGGCGA CCTTGACTGG
GTGGCACTGA TGAAGGACTT CACCAGCGAC TTCAACCCTA CGCTGGCATC CGCCGCCAAA
GAAATGAAAA CCGTGAAGGC GGGGCTGGAA ACGGACATCG TGTGCTCTGA ATGCGGCAAA
CCCATGGCCA TCAAGTTCGG CAAGGCCGGC CCCTTTCTGG CATGCACCGG CTACCCCGAC
TGCAAAAACA CCAGTAACTT CACACGTGAT GAAAGCGGAA CAATACAGCT GGTTGAACGT
GAGCAGGAAG AACTGAAACC CGTCGGCACC TGCCCCGAAT GCGGCAAAGA CCTTGTGGTC
AAACAGGCAC GCACGGGCAG CAGATTCATC GCCTGTACGG GCTATCCCGA CTGCAAACAT
ACCGAACCGT TTTCCACCGG CGTTCCCTGC CCCAATGACG GCTGCGACGG CCAGCTGGTG
GAAAAAAGCT CGCGCCGCGG CAAGATATTC TATTCCTGCA ACCGGTACCC CCAGTGCGAC
TATGCCACAT GGAACTGGCC TGTAGCCGAA GCCTGCCCGC AGTGCGATTC CAAAATTCTG
ACTATCAAGT CCACCAAGGC AAGGGGCAAA CATATTGCCT GCCCTGCCTG CAAGTACACG
CGGGCGCTGG AAGACGAAGA ATAG
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| Protein sequence | MGKDLIIVES PAKVKTIKKF LGNKYMVQAS VGHIRDLPTK ELGVDEENDF SPDYQVIQGK
QKVVSALREA AAKADNVFLA PDPDREGEAI AWHVAEIIAK ENKNISRIQF NEITARAVRE
ALENPRELNR SLFDAQQARR VLDRLVGYKI SPILWNKIKR GISAGRVQSV ALRLIVDRER
ERYAFTSEEY WVFRANLAAE TPPPFKAELF KVDDKKPAIA SAEQAQELEK SIEGKAFIVD
SVQEKERSRK PQPPFITSTL QQLASQRLGF SAKRTMSVAQ RLYEGLDLGD MGTTALITYM
RTDSVRISDE ARDSARELIA SLYGKEYCPA KAPVYKTKGS AQDAHEAIRP VDVTLTPDKI
KGLVAPEQYS LYRLIWSRFM ASQMAPARFH DTTVLIGCGG TQWRVKGERL LFPGYMAAAP
ASAKEANVEL PPMQQGQTLE LTLLEKEQKF TQPPARYSEA SLVREMEEKG IGRPSTYASI
ISTIVDRDYT RLEEKHFVPT DLGFVVCDML TNHFGTLMDI GFTAQMENSL DKVAEGDLDW
VALMKDFTSD FNPTLASAAK EMKTVKAGLE TDIVCSECGK PMAIKFGKAG PFLACTGYPD
CKNTSNFTRD ESGTIQLVER EQEELKPVGT CPECGKDLVV KQARTGSRFI ACTGYPDCKH
TEPFSTGVPC PNDGCDGQLV EKSSRRGKIF YSCNRYPQCD YATWNWPVAE ACPQCDSKIL
TIKSTKARGK HIACPACKYT RALEDEE
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