| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0087 |
|---|
| Symbol | |
|---|
| ID | 3756458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 80378 |
|---|
| End bp | 81283 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637780945 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_386583 |
|---|
| Protein GI | 78355134 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG AAATTGATCT GCTGCGCTGC TTTGCCGCGG TGGCAGAAGA AGGCGGCTTC
ACTGCGGCGG GCAGCCGTAT TGGCCTTACA CAGTCCGCCG TCAGTCAGCG CATACGCAGA
CTGGAAGACA GGCTAGGGCG CAGGCTTTTG GTGCGCACAA CCCGCACCCT GAGCCTGAGC
ACCGAAGGAG AAATGCTGCT GCATTACGCC CAGCGCATGC TGGCCCTGCA TGACGAAGCA
CTTGCGCGGC TGCGTGCTTC CAGCATCAAA GGGGCCTTGC GCATCGGATT TGTGGACTAT
TTCGGGCCTG ACGCCATGCC GGAAACCATC CGGCAATTTA TCAGAAGCTT TCCGGACATC
CACCTTGAAC TCCATGCCGG GCTGGGCATG GAACTGCGCC AGCTTTTCGA CCACGGCAAA
CTGGATGTAC TGGTGGCAGG CGATGACGGA CAGCACACCG GAACCTGTAT TGCCCGCGAT
ACTCTGGTCT GGGCCTGCCA TACCGCATAC AACTGCGCCG CAGCGCGCCC TGCGTTCATG
CTTGACCACC TTGCAGCTGA ACCGGCGGCC ACCGGTGCTC CGGTACCGCT TGTGGCGCTG
CCGCTGCCCT GCGTGTTTCG CAGCGCGGCC ATTGCCGCAC TGGAATCACT GCAGCGCCCA
TGGGAGGTGG TCTTTACCGC CACGGGCATG GCCAGCGTAC TTGCTGCCGT ACGCGCCGGA
CTGGGCATCA CCGTGCTGCC CCGCAGCGCC CTGACCCCCG ACCTGAAAAT TCCCGCACCG
GAGGAAGGGT TCCCCCCGCT TCCGGCCTTT TCCACCTGCA TCTACGCCAA CGACAATGTC
AATCTGCAAG CACTGGAGGC GCTTACCCGC CACCTGCGTC AGCAGCTTGG TACACAGCGG
GCATAG
|
|---|
| Protein sequence | MELEIDLLRC FAAVAEEGGF TAAGSRIGLT QSAVSQRIRR LEDRLGRRLL VRTTRTLSLS
TEGEMLLHYA QRMLALHDEA LARLRASSIK GALRIGFVDY FGPDAMPETI RQFIRSFPDI
HLELHAGLGM ELRQLFDHGK LDVLVAGDDG QHTGTCIARD TLVWACHTAY NCAAARPAFM
LDHLAAEPAA TGAPVPLVAL PLPCVFRSAA IAALESLQRP WEVVFTATGM ASVLAAVRAG
LGITVLPRSA LTPDLKIPAP EEGFPPLPAF STCIYANDNV NLQALEALTR HLRQQLGTQR
A
|
|---|
| |