| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0037 |
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| Symbol | |
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| ID | 3756423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 28946 |
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| End bp | 30304 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637780890 |
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| Product | nodulation efficiency protein NfeD |
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| Protein accession | YP_386533 |
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| Protein GI | 78355084 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00280773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGT CTCATGCTCT GTATCGCAAA ATAACGGCCA TTTGCGCCAC ATTATGCTTT
TTCGCAGCCT TTCACCCTGC CATGCCAGCT TCCGGAGCTG AAAATGCCGT GCAGAAACAC
ACTGTTTCTG TGGTGCATGT AACGATAAAG GCGGGCATCG GTCCTGCCAC GGCTGACCTT
TTACGCGGAG CCATCAAACA GGCCGAAAGC GGCAGCGACA TGGTACTGGT GACGCTGGAC
ACGCCCGGCG GCCTTGTATC TTCCATGCGC GAAATGGTGC AGGACATTCT GAATGCGGAT
GTACCCGTGG GAGTATGGGT CGGTCCTTCC GGAGCACATG CAGCCAGTGC GGGGGTGTTT
ATTGTGGCGG CTTCCAGCAT CAGCGGCATG GCCCCGCAGA CAACCATGGG AGCGGCCATC
CCCGTCACAC CGGACGGAGC CGACACCAAA GGGGATATGG CCACAAAGGT AAAAAACGAC
CTGTCCAGCC TTGTGTCCGG TCTGGCAGAA CGGCGCAACC GCAATGTGGA CTGGTATGTT
TCGGCAGTTA GGGAAGGCAA AAGCCTGCCT GCCTCACAGG CAATAATGAA CAATGTTGTT
GAGTTTATGG CCACCACCCC CGAAGACTTT CTTGTACAGG CGGGCAGCAG GGGTGTACCG
GCAGGCATGG GGACATTGCG GTTCACCGCC GACGACATAC GCATTATCCC TTACGAGCCA
GGTTTGCGGT ACCGCTTTCT GGGCTGGTTG CTCGACCCGC AGGTGGCGTA TCTGCTGCTG
CTTGCCGGTG TGGCTCTGCT TTTTGTCGAA TTTACCCATG CAGGAGCCAT ACTGCCCGGA
GTGCTCGGAG CGCTCTCACT GCTGTTGGGG CTGTATGCCA TGACCATACT CCCCACGGCG
GCGGCGGGCC TGCTTCTTAT TCTTCTGGGG CTTGTCCTCT TTCTGCTGGA AATCAAAGTG
GTCAGTTTCG GCCTGCTTTC ACTGGCCGGT GTGGCCGCGC TGTTCATCGG CTCGCTCATA
CTCTTTCCCG AAAGTGAAGG GCTGCGCCTG CCCATGATGA CCATCGGCCC CACCGTACTG
GGCATAAGCG CCTTCATGGG CGGTCTGGTA TGGCTTGCGG TCAAGGCGCA GCGCAGCAAA
TCCGCAATGG CTTCAGATCA GCTGGCAGGA CAACAGGCCA TGGTCATGCG CTGGCAGGGC
CGCAAAGGAA CCGTAAAACT GCACGGCACC CTGTGGAATG CCGTAACCAG AGAAGAACAA
CCCATCGCCA AAGGCGAGAC AGTCACAGTT ACCGGTGCAA AGGGGCTGAC ACTCCATGTG
TCGACGCATC CGGCACCGGA GGATGCTGTG CAGGAATAG
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| Protein sequence | MNTSHALYRK ITAICATLCF FAAFHPAMPA SGAENAVQKH TVSVVHVTIK AGIGPATADL
LRGAIKQAES GSDMVLVTLD TPGGLVSSMR EMVQDILNAD VPVGVWVGPS GAHAASAGVF
IVAASSISGM APQTTMGAAI PVTPDGADTK GDMATKVKND LSSLVSGLAE RRNRNVDWYV
SAVREGKSLP ASQAIMNNVV EFMATTPEDF LVQAGSRGVP AGMGTLRFTA DDIRIIPYEP
GLRYRFLGWL LDPQVAYLLL LAGVALLFVE FTHAGAILPG VLGALSLLLG LYAMTILPTA
AAGLLLILLG LVLFLLEIKV VSFGLLSLAG VAALFIGSLI LFPESEGLRL PMMTIGPTVL
GISAFMGGLV WLAVKAQRSK SAMASDQLAG QQAMVMRWQG RKGTVKLHGT LWNAVTREEQ
PIAKGETVTV TGAKGLTLHV STHPAPEDAV QE
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