Gene Dde_0037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0037 
Symbol 
ID3756423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp28946 
End bp30304 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content58% 
IMG OID637780890 
Productnodulation efficiency protein NfeD 
Protein accessionYP_386533 
Protein GI78355084 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1030] Membrane-bound serine protease (ClpP class) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00280773 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACGT CTCATGCTCT GTATCGCAAA ATAACGGCCA TTTGCGCCAC ATTATGCTTT 
TTCGCAGCCT TTCACCCTGC CATGCCAGCT TCCGGAGCTG AAAATGCCGT GCAGAAACAC
ACTGTTTCTG TGGTGCATGT AACGATAAAG GCGGGCATCG GTCCTGCCAC GGCTGACCTT
TTACGCGGAG CCATCAAACA GGCCGAAAGC GGCAGCGACA TGGTACTGGT GACGCTGGAC
ACGCCCGGCG GCCTTGTATC TTCCATGCGC GAAATGGTGC AGGACATTCT GAATGCGGAT
GTACCCGTGG GAGTATGGGT CGGTCCTTCC GGAGCACATG CAGCCAGTGC GGGGGTGTTT
ATTGTGGCGG CTTCCAGCAT CAGCGGCATG GCCCCGCAGA CAACCATGGG AGCGGCCATC
CCCGTCACAC CGGACGGAGC CGACACCAAA GGGGATATGG CCACAAAGGT AAAAAACGAC
CTGTCCAGCC TTGTGTCCGG TCTGGCAGAA CGGCGCAACC GCAATGTGGA CTGGTATGTT
TCGGCAGTTA GGGAAGGCAA AAGCCTGCCT GCCTCACAGG CAATAATGAA CAATGTTGTT
GAGTTTATGG CCACCACCCC CGAAGACTTT CTTGTACAGG CGGGCAGCAG GGGTGTACCG
GCAGGCATGG GGACATTGCG GTTCACCGCC GACGACATAC GCATTATCCC TTACGAGCCA
GGTTTGCGGT ACCGCTTTCT GGGCTGGTTG CTCGACCCGC AGGTGGCGTA TCTGCTGCTG
CTTGCCGGTG TGGCTCTGCT TTTTGTCGAA TTTACCCATG CAGGAGCCAT ACTGCCCGGA
GTGCTCGGAG CGCTCTCACT GCTGTTGGGG CTGTATGCCA TGACCATACT CCCCACGGCG
GCGGCGGGCC TGCTTCTTAT TCTTCTGGGG CTTGTCCTCT TTCTGCTGGA AATCAAAGTG
GTCAGTTTCG GCCTGCTTTC ACTGGCCGGT GTGGCCGCGC TGTTCATCGG CTCGCTCATA
CTCTTTCCCG AAAGTGAAGG GCTGCGCCTG CCCATGATGA CCATCGGCCC CACCGTACTG
GGCATAAGCG CCTTCATGGG CGGTCTGGTA TGGCTTGCGG TCAAGGCGCA GCGCAGCAAA
TCCGCAATGG CTTCAGATCA GCTGGCAGGA CAACAGGCCA TGGTCATGCG CTGGCAGGGC
CGCAAAGGAA CCGTAAAACT GCACGGCACC CTGTGGAATG CCGTAACCAG AGAAGAACAA
CCCATCGCCA AAGGCGAGAC AGTCACAGTT ACCGGTGCAA AGGGGCTGAC ACTCCATGTG
TCGACGCATC CGGCACCGGA GGATGCTGTG CAGGAATAG
 
Protein sequence
MNTSHALYRK ITAICATLCF FAAFHPAMPA SGAENAVQKH TVSVVHVTIK AGIGPATADL 
LRGAIKQAES GSDMVLVTLD TPGGLVSSMR EMVQDILNAD VPVGVWVGPS GAHAASAGVF
IVAASSISGM APQTTMGAAI PVTPDGADTK GDMATKVKND LSSLVSGLAE RRNRNVDWYV
SAVREGKSLP ASQAIMNNVV EFMATTPEDF LVQAGSRGVP AGMGTLRFTA DDIRIIPYEP
GLRYRFLGWL LDPQVAYLLL LAGVALLFVE FTHAGAILPG VLGALSLLLG LYAMTILPTA
AAGLLLILLG LVLFLLEIKV VSFGLLSLAG VAALFIGSLI LFPESEGLRL PMMTIGPTVL
GISAFMGGLV WLAVKAQRSK SAMASDQLAG QQAMVMRWQG RKGTVKLHGT LWNAVTREEQ
PIAKGETVTV TGAKGLTLHV STHPAPEDAV QE