Gene Dde_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0004 
Symbol 
ID3755946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp5212 
End bp7647 
Gene Length2436 bp 
Protein Length811 aa 
Translation table11 
GC content56% 
IMG OID637780857 
ProductDNA gyrase subunit A 
Protein accessionYP_386500 
Protein GI78355051 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.882068 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCAATC AGGTTACCAT CGAAGACGAG CTTAAGAAGT CATATCTTGA GTACTCGCTG 
AGTGTTATTA TAGGCCGCGC CATTCCCGAT GTGCGCGATG GCCTGAAGCC CGTGCACCGG
CGCATCATGT TCGCCCAGCA CGAGCTGGGC AACGGGTATA ACCGTGCGCC GAAAAAATCG
GCCCGTGTGG TCGGTGACGT TATCGGTAAA TACCACCCGC ATGGCGATTT CGCCGTGTAC
GATGCCCTTG TGCGCATGGC ACAGGATTTT TCCATGCGCG ACCCGCTTGT CACCGGTCAG
GGCAACTTCG GTTCCATTGA CGGCGATTCC GCGGCAGCCA TGCGTTATAC CGAAGTGCGC
ATGTCGAGAC TCGCTTCGGA ATTCATGGCC GATATAGACA AGGAAACCGT CGAGTTCCGC
CCCAACTATG ACAATACCCT GCAGGAACCC GCGGTGCTGC CCACCAAGGT GCCCAACCTG
CTGCTTAACG GCTCTTCGGG TATTGCCGTG GGTATGGCCA CCAATATTCC GCCGCACAAC
CTCGGCGAAC TGGTTGACGG CCTGCTGCTG GAACTGGACT CTCCGGAATG CACGGTGGCT
GATCTTGCCG GGCTGGTCAA AGGGCCCGAC TTTCCCACCG GCGGCTTCTG CTACGCGGGC
AGAGGACTGC GCGATGCGTA TGAAACAGGA CGGGGCACTG TTAAAATCCG CGGCCGTGTG
GAAGTGGAAG AACGCAAAAA AGGCTTCCAG TCCATTGTCA TCCGCGAAAT ACCCTATGCG
CTGAACAAGT CATCGCTTGT CGAAAAAATA GCCGCGCTGG CCAACGAACG CAGGATAGAA
GGCATAACCG ACCTGCGTGA CGAATCTGAC AGACGCGGTA TCCGCGTGGT CATAGACCTG
AAGCGCGGCA CCATTCCCGA AATCGTCATT AACCAGCTGT ATAAATATAC TCCGCTGGAG
ACGTCTTTCG GCATCAATAT GCTGGCTGTG GTGGGCAACA GGCCCCAGCT GCTTACGCTG
AAAAAGGTCT TTGAGTGCTT TTTGCAGCAC CGGCGCGAAG TCATTATCCG CAGAACACAC
TATGACCTGC GCAAGGCCGA AGCCCGTGCC CATATTCTGG AAGGTCTGCG TATCGCGCTG
GATAACATCG ACGAAGTGGT CGAACTTATC CGTGCATCCA AAACACCGCC GGAAGCAAAA
GAACGGCTCA TGCAGCGGTT CTCGCTTTCC GAAGTGCAGG CTCAGGCCAT TCTTGATATG
CGTCTGCAGC GTCTTACCAA CCTCGAACAC GAAAAACTGA TCGAGGAATA CCGCGAGCTG
CTTAAAAAGA TCGAATACTT CAAGTCCATT CTGGAAAATG AAGAAGTGCT GCGCGGCGTT
ATCCGTGACG AGCTTAAAGA GCTCAAGGAA ACATACGCCA CCCCGCGGCG GACCGAAATG
CTGGAAGATG AACTTGAAGG AATAGACATC GAGGACCTTA TTCCCGACGA GGATGTGGTC
ATCACACTGT CGCGGCGCGG GTACATCAAG CGTACTCCGC TGGACAGCTA TCAGCAGCAG
CGCCGCGGCG GTAAGGGCAT TGCCGGTGTG CATACCGGCG ATGGTGACTT TGTGCAGGAT
TTTCTGGTGA CTACAAACCA CCAGTACCTG CTGCTGTTCA CCAACAAAGG GCGCATGTTC
CAGCTTAAGG TGCATCAGGT GCCCGAAGGC AGTCGTACCG CCAAGGGAAT GCACATCAAC
AACCTGCTGC CCATGGAAGA AAACGAATGG GTGAACACCG CGCTGACTAT CCGTGAATTC
ACGGAAGAAA AGTATTTCCT TTTCTCCACC CGCAAAGGCA TGGTCAAGCG CTCCAGCGCA
TCGCTGTATG CCAAGGCCCG TCGTACAGGG CTTATTGCCG TGGGGCTGCG TGAAGGAGAT
GAGCTTATCA TGGTGCGCGA GGTGGATGAC AACTGCGAAG TTGTTCTGAC CACCGAAAAA
GGTATCGCCA TACGCTTCGG CTGCGGCGAT GTGCGCCCCA TGGGGCGTTC CGCTACCGGC
GTCAAAGGCA TTGCGCTGAG TCAGGACGAC AGTGTGGTGG CCTGCGTTAC CGTGCAGGGC
GGACTGGAAT CGGAAATAAT GACCGTTTCG CGGTACGGAT ACGGTAAACG GACACTTATC
GATCGGTACC GTGTACAGAG CCGCGGCGGT AAAGGTGTCA TCAACTTCAA GGTGACACCC
AAGACCGGTG AAGTGCTGGG CGCCATGACC GTAGTATCCA ACGACCAGCT GATTCTGCTT
ACCTCCACCA ACAAGATTAT CCGCATAGGT GTGAAAGAGG TCCGCAGTGT GGGCCGCGCC
ACACAGGGCG TGCGTCTTGT CTGGCTGGAC GAAGGCGACC ATGTGGTCGG CTTTGACAGA
GTTTCGGAGC AGGAACAGGA ACAGCTTGAC GATTAG
 
Protein sequence
MSNQVTIEDE LKKSYLEYSL SVIIGRAIPD VRDGLKPVHR RIMFAQHELG NGYNRAPKKS 
ARVVGDVIGK YHPHGDFAVY DALVRMAQDF SMRDPLVTGQ GNFGSIDGDS AAAMRYTEVR
MSRLASEFMA DIDKETVEFR PNYDNTLQEP AVLPTKVPNL LLNGSSGIAV GMATNIPPHN
LGELVDGLLL ELDSPECTVA DLAGLVKGPD FPTGGFCYAG RGLRDAYETG RGTVKIRGRV
EVEERKKGFQ SIVIREIPYA LNKSSLVEKI AALANERRIE GITDLRDESD RRGIRVVIDL
KRGTIPEIVI NQLYKYTPLE TSFGINMLAV VGNRPQLLTL KKVFECFLQH RREVIIRRTH
YDLRKAEARA HILEGLRIAL DNIDEVVELI RASKTPPEAK ERLMQRFSLS EVQAQAILDM
RLQRLTNLEH EKLIEEYREL LKKIEYFKSI LENEEVLRGV IRDELKELKE TYATPRRTEM
LEDELEGIDI EDLIPDEDVV ITLSRRGYIK RTPLDSYQQQ RRGGKGIAGV HTGDGDFVQD
FLVTTNHQYL LLFTNKGRMF QLKVHQVPEG SRTAKGMHIN NLLPMEENEW VNTALTIREF
TEEKYFLFST RKGMVKRSSA SLYAKARRTG LIAVGLREGD ELIMVREVDD NCEVVLTTEK
GIAIRFGCGD VRPMGRSATG VKGIALSQDD SVVACVTVQG GLESEIMTVS RYGYGKRTLI
DRYRVQSRGG KGVINFKVTP KTGEVLGAMT VVSNDQLILL TSTNKIIRIG VKEVRSVGRA
TQGVRLVWLD EGDHVVGFDR VSEQEQEQLD D