Gene Gmet_3547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3547 
Symbol 
ID3739806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3979334 
End bp3982810 
Gene Length3477 bp 
Protein Length1158 aa 
Translation table11 
GC content64% 
IMG OID637780836 
Producttranscription-repair coupling factor 
Protein accessionYP_386477 
Protein GI78224730 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0162042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCTCG TAGACAGCCA GCTCATCGAC CGGATCACCG GCCACCTCGC CCCAAAAACC 
GGCCGGGTCA CCCTCACCGG TCTCAAAGGA TCGGCCCCGG CCTATCTCCT GGCCCAGCTT
CTGAAAACGG CGGAGCGCCC CCTCCTCGTC ATCGCCCCCG ACGCCGACAG GGCCGCCGAG
ATCTGCACCG AGCTTCGCTT CTTCAGCGGG CGCCCCTTCG ACGTCCTCTC CTTTCCCGCC
TGGGACGTGG CCCCCTTCGA AAAGGGATCG CCCCACGCCG ACGTGACCGG CCAGCGGCTC
GCCTGCCTCC GCCGCCTCAT GGACCGCAAG ACGGCCGCCG TGGTGACCAC ACCGGACGCC
CTCAGGCAGC GGGTGCTCCC CAGGACGATG CTGGACAACG CCTCCCTCTA CTTCCTCCCC
GGCGAGGAAA GCAACCGGGA TGAATTTCTC GCAAAACTCG TCACCCTGGG CTACCTGAAT
GTCCCCCTGG TGGAAGACCG GGGAACCTTC GCCGTAAGGG GAGGGATCGT GGACATATTC
CCCCCCGGTT TCGAACAGCC GGTGCGGATC GAGTTCTTCG GCGACTTCGT GGAGACCATC
CGGGCCTTCG ATCCCCTATC CCAGCGCTCC CTGGCTCCCC TGGAAGAGCT CCTTCTCCTC
CCCTCCCGGG AGATGGTCCT GACCGATGAA GTGCTGAAGT CCGCCTCTCA CCACATCAAG
GCCCGCTGCG ACGAGCTGGA AATATCCCCC GTGGCCCGGC GAGAACTTCT GGAGCAGCTA
CAGCAAGGCC TCTATCCCAC CGGCGTAGAG TGGCTCCTCC CTCTCTTCCA CCCCCGGTTG
GAGACCCTCT TCGACTATGC CGGCGACGCA GTCCGGGTGG TGTTGGACCC GGAAGCCCTG
GCCGAAGAGG ACGAACGTTT CGACCGCGAA CTGGTAACGG CCGAGGACCA GGCCCGGGAA
CGGGGAGACC TCTTCGCGTC ACCGGCGGAA TTCTTCCTGA CAGCTTCGGA AACCGCCGGC
AGCATCGAAG CGGGACGGCT CGTGACCATC CCCTACCTGA CCGTAACCGG GGAGAGCGAC
GAAAAAACAG CCCTCGCCCT GGACATCCAG GAAAACACCG ACCTCAAGGT GGATGTCTCC
TCCGACAGCG AGCGGATCCT GAAGCCTCTG GTGACAAGGC TCAACGGCTG GCTGGAGGAA
CGGCAGCGGG TGATCGTCGC CTGCCACCAG CGGGGCCAGG CCCAGCGCCT CTACGAGCTC
CTCTCCCACT ACCCCCTCCC CCTGAACATC TCCGACCGCC CCTTCCCCGC CGAGCGGGAG
CGGGACGACG GCAAGGTGGA CGTTGTAATC GGCGACCTTT CACGGGGGTT CCGGCTCCCC
GAAGAGAAGC TCATTGTTAT CGCCGAAGAG GAGATCTTCG GCCGCCGCCA GAAGCGGCGC
GGGGTCTCGG AGCTGCGCAA GAAGCAGATC ATGACGTCGC TGGCCGAGCT GAAGCCCGGC
GACTACATGG TCCACCTGGA CCACGGCATC GGCATCTACC GGGGACTGCA ACACATTTCC
CTGAGCGGCT GCGCCGGGGA CTTCATCCTC CTGGAGTACG CGGGGGGAGA CAAGCTCTAC
CTCCCCGTGG ACCGGCTGAA CCTGGTCCAG CGCTACGTGG GGGCCGAGGG GCTCGAACCC
CGGGTGGACA AGCTGGGGGG GACCTCCTGG GAAAAGGCCA AGGGGAAGGC CCGGGCCGCC
GTCCAGGAGA TGGCCGGAGA ACTGCTCCAG ATCTACGCTG CCCGCCAGCT CCACGAAGGG
CATGCCTTCT CCCCCCCCGA CGACCTCTAC CGGGAGTTTG AGGCCTCCTT CGCCTACGAG
GAGACCTCGG ACCAGATGTC GGCCATCATG GATGTGATCG GCGACATGAC GAGCGCGAAG
CCCATGGACC GCCTTGTCTG CGGCGACGTC GGCTACGGCA AGACCGAGGT GGCCATGCGG
GGGGCTTTCA AGGCGGTCAT GGACGGGAAA CAGGTGGCGG TGCTGGTCCC CACCACGGTC
CTGGCCCAGC AGCACCTGGA AACCTTCAAG GCCCGTCTCG GCGCCTACCC GGTCACCGTA
GAGATGCTCT CCCGCTTCCG CACGCCCAAG GAGCAGAAGG AAATCCTTGA GAAGGTGAAG
AAAGGGGCCA TCGACGTCAT CATCGGTACC CATCGCCTGC TCCAGAGCGA CGTGACCTTC
AAGGACCTGG GGCTCCTCAT CGTGGACGAG GAGCAGCGCT TCGGCGTCAC CCACAAGGAA
AAACTCAAGA AATACAAGGC GGTGGTGGAT ATCCTGACCC TCACCGCCAC CCCGATCCCC
CGGACCCTCT ACATGTCCAT GATGGGGATC CGGGATCTCT CCATCATCGA CACCCCGCCC
GTGGACCGGC TGGCGGTGAA GACCTTCGTG GCCCGCTCCT CCGACGACCT TATCCGGGAG
GCGGTCATGC GGGAGCTGCG CCGGGGGGGG CAGATCTTCT TCGTCCACAA CCGGGTCCAG
TCCATCATGA ACTGGGCCGA GCACCTGCGC CGCATCGTCC CCGAGGCGAA GATCGCCGTG
GGGCACGGCC AGATGGACGA AGGGGAACTG GAGAAGGTGA TGCTCGGCTT CATGCACGGG
GAGACCAATC TCCTGCTCTG CACGACCATA ATCGAGTCGG GGCTCGACAT CCCCAACGCC
AACACCCTCA TCATCGACCG GGCGGACACC TTCGGCCTGG CCCAGCTCTA CCAGCTTCGG
GGTCGCGTCG GGCGCTCCAA GCAGCGGGCC TACGCCTACC TGCTGATCCC CGGCGAAGGG
GCCATCTCGT CCGATGCCCG TGAACGGCTG AAGATTATTC AGGAACTGAC GGAACTCGGC
GCCGGTTTCC GGCTCGCCAC CCATGATCTC GAAATCCGCG GCGCCGGCGA CATCCTCGGG
GCCAAGCAGT CGGGGAACAT AGCCGCCGTT GGCTTTGACC TCTACACGGA GCTCCTGGAG
GAGGCGATCC AGAACCTGAA GGGTGAGGAA CGGCTGGAGC GGGTGGAGCC GGAGATCAAC
CTCCGCATCC CCGCCTTCGT TCCCGAGGAT TACGTCCGGG AGCCGAACCA GCGGCTTATC
ATCTACAAGA AGCTCACCCA GGCCGAAAGC GAGGAAGAAG TGGACGAAGT CATGGCGGAA
CTGGTGGACC GCTTCGGCAA GCTTCCCCTG GCCGCCACGT ACCTCCTGGA AGTGATGAAG
CTGCGGATTC ACTTCAAGCG CTTCCTGATC ACCATGGCGG AATTCGACGG CAGGCGCCTC
TGCCTCAGCT TCCACCAGAA GACGCCGGTC CCTCCGGATA CCATCATCGG ACTCATCCGT
TCAAACCCGA AGCGATACCA GTTCTCACCG GACTTCCGGC TTACGGCGGA GCTTGCCGAC
ACCTCCTTCG AGGGGGTCCT GGAAGAGGCC AGAAATCTCT TGAAAAGGCT TGGGTGA
 
Protein sequence
MPLVDSQLID RITGHLAPKT GRVTLTGLKG SAPAYLLAQL LKTAERPLLV IAPDADRAAE 
ICTELRFFSG RPFDVLSFPA WDVAPFEKGS PHADVTGQRL ACLRRLMDRK TAAVVTTPDA
LRQRVLPRTM LDNASLYFLP GEESNRDEFL AKLVTLGYLN VPLVEDRGTF AVRGGIVDIF
PPGFEQPVRI EFFGDFVETI RAFDPLSQRS LAPLEELLLL PSREMVLTDE VLKSASHHIK
ARCDELEISP VARRELLEQL QQGLYPTGVE WLLPLFHPRL ETLFDYAGDA VRVVLDPEAL
AEEDERFDRE LVTAEDQARE RGDLFASPAE FFLTASETAG SIEAGRLVTI PYLTVTGESD
EKTALALDIQ ENTDLKVDVS SDSERILKPL VTRLNGWLEE RQRVIVACHQ RGQAQRLYEL
LSHYPLPLNI SDRPFPAERE RDDGKVDVVI GDLSRGFRLP EEKLIVIAEE EIFGRRQKRR
GVSELRKKQI MTSLAELKPG DYMVHLDHGI GIYRGLQHIS LSGCAGDFIL LEYAGGDKLY
LPVDRLNLVQ RYVGAEGLEP RVDKLGGTSW EKAKGKARAA VQEMAGELLQ IYAARQLHEG
HAFSPPDDLY REFEASFAYE ETSDQMSAIM DVIGDMTSAK PMDRLVCGDV GYGKTEVAMR
GAFKAVMDGK QVAVLVPTTV LAQQHLETFK ARLGAYPVTV EMLSRFRTPK EQKEILEKVK
KGAIDVIIGT HRLLQSDVTF KDLGLLIVDE EQRFGVTHKE KLKKYKAVVD ILTLTATPIP
RTLYMSMMGI RDLSIIDTPP VDRLAVKTFV ARSSDDLIRE AVMRELRRGG QIFFVHNRVQ
SIMNWAEHLR RIVPEAKIAV GHGQMDEGEL EKVMLGFMHG ETNLLLCTTI IESGLDIPNA
NTLIIDRADT FGLAQLYQLR GRVGRSKQRA YAYLLIPGEG AISSDARERL KIIQELTELG
AGFRLATHDL EIRGAGDILG AKQSGNIAAV GFDLYTELLE EAIQNLKGEE RLERVEPEIN
LRIPAFVPED YVREPNQRLI IYKKLTQAES EEEVDEVMAE LVDRFGKLPL AATYLLEVMK
LRIHFKRFLI TMAEFDGRRL CLSFHQKTPV PPDTIIGLIR SNPKRYQFSP DFRLTAELAD
TSFEGVLEEA RNLLKRLG