Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_3547 |
Symbol | |
ID | 3739806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 3979334 |
End bp | 3982810 |
Gene Length | 3477 bp |
Protein Length | 1158 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637780836 |
Product | transcription-repair coupling factor |
Protein accession | YP_386477 |
Protein GI | 78224730 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0162042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCTCG TAGACAGCCA GCTCATCGAC CGGATCACCG GCCACCTCGC CCCAAAAACC GGCCGGGTCA CCCTCACCGG TCTCAAAGGA TCGGCCCCGG CCTATCTCCT GGCCCAGCTT CTGAAAACGG CGGAGCGCCC CCTCCTCGTC ATCGCCCCCG ACGCCGACAG GGCCGCCGAG ATCTGCACCG AGCTTCGCTT CTTCAGCGGG CGCCCCTTCG ACGTCCTCTC CTTTCCCGCC TGGGACGTGG CCCCCTTCGA AAAGGGATCG CCCCACGCCG ACGTGACCGG CCAGCGGCTC GCCTGCCTCC GCCGCCTCAT GGACCGCAAG ACGGCCGCCG TGGTGACCAC ACCGGACGCC CTCAGGCAGC GGGTGCTCCC CAGGACGATG CTGGACAACG CCTCCCTCTA CTTCCTCCCC GGCGAGGAAA GCAACCGGGA TGAATTTCTC GCAAAACTCG TCACCCTGGG CTACCTGAAT GTCCCCCTGG TGGAAGACCG GGGAACCTTC GCCGTAAGGG GAGGGATCGT GGACATATTC CCCCCCGGTT TCGAACAGCC GGTGCGGATC GAGTTCTTCG GCGACTTCGT GGAGACCATC CGGGCCTTCG ATCCCCTATC CCAGCGCTCC CTGGCTCCCC TGGAAGAGCT CCTTCTCCTC CCCTCCCGGG AGATGGTCCT GACCGATGAA GTGCTGAAGT CCGCCTCTCA CCACATCAAG GCCCGCTGCG ACGAGCTGGA AATATCCCCC GTGGCCCGGC GAGAACTTCT GGAGCAGCTA CAGCAAGGCC TCTATCCCAC CGGCGTAGAG TGGCTCCTCC CTCTCTTCCA CCCCCGGTTG GAGACCCTCT TCGACTATGC CGGCGACGCA GTCCGGGTGG TGTTGGACCC GGAAGCCCTG GCCGAAGAGG ACGAACGTTT CGACCGCGAA CTGGTAACGG CCGAGGACCA GGCCCGGGAA CGGGGAGACC TCTTCGCGTC ACCGGCGGAA TTCTTCCTGA CAGCTTCGGA AACCGCCGGC AGCATCGAAG CGGGACGGCT CGTGACCATC CCCTACCTGA CCGTAACCGG GGAGAGCGAC GAAAAAACAG CCCTCGCCCT GGACATCCAG GAAAACACCG ACCTCAAGGT GGATGTCTCC TCCGACAGCG AGCGGATCCT GAAGCCTCTG GTGACAAGGC TCAACGGCTG GCTGGAGGAA CGGCAGCGGG TGATCGTCGC CTGCCACCAG CGGGGCCAGG CCCAGCGCCT CTACGAGCTC CTCTCCCACT ACCCCCTCCC CCTGAACATC TCCGACCGCC CCTTCCCCGC CGAGCGGGAG CGGGACGACG GCAAGGTGGA CGTTGTAATC GGCGACCTTT CACGGGGGTT CCGGCTCCCC GAAGAGAAGC TCATTGTTAT CGCCGAAGAG GAGATCTTCG GCCGCCGCCA GAAGCGGCGC GGGGTCTCGG AGCTGCGCAA GAAGCAGATC ATGACGTCGC TGGCCGAGCT GAAGCCCGGC GACTACATGG TCCACCTGGA CCACGGCATC GGCATCTACC GGGGACTGCA ACACATTTCC CTGAGCGGCT GCGCCGGGGA CTTCATCCTC CTGGAGTACG CGGGGGGAGA CAAGCTCTAC CTCCCCGTGG ACCGGCTGAA CCTGGTCCAG CGCTACGTGG GGGCCGAGGG GCTCGAACCC CGGGTGGACA AGCTGGGGGG GACCTCCTGG GAAAAGGCCA AGGGGAAGGC CCGGGCCGCC GTCCAGGAGA TGGCCGGAGA ACTGCTCCAG ATCTACGCTG CCCGCCAGCT CCACGAAGGG CATGCCTTCT CCCCCCCCGA CGACCTCTAC CGGGAGTTTG AGGCCTCCTT CGCCTACGAG GAGACCTCGG ACCAGATGTC GGCCATCATG GATGTGATCG GCGACATGAC GAGCGCGAAG CCCATGGACC GCCTTGTCTG CGGCGACGTC GGCTACGGCA AGACCGAGGT GGCCATGCGG GGGGCTTTCA AGGCGGTCAT GGACGGGAAA CAGGTGGCGG TGCTGGTCCC CACCACGGTC CTGGCCCAGC AGCACCTGGA AACCTTCAAG GCCCGTCTCG GCGCCTACCC GGTCACCGTA GAGATGCTCT CCCGCTTCCG CACGCCCAAG GAGCAGAAGG AAATCCTTGA GAAGGTGAAG AAAGGGGCCA TCGACGTCAT CATCGGTACC CATCGCCTGC TCCAGAGCGA CGTGACCTTC AAGGACCTGG GGCTCCTCAT CGTGGACGAG GAGCAGCGCT TCGGCGTCAC CCACAAGGAA AAACTCAAGA AATACAAGGC GGTGGTGGAT ATCCTGACCC TCACCGCCAC CCCGATCCCC CGGACCCTCT ACATGTCCAT GATGGGGATC CGGGATCTCT CCATCATCGA CACCCCGCCC GTGGACCGGC TGGCGGTGAA GACCTTCGTG GCCCGCTCCT CCGACGACCT TATCCGGGAG GCGGTCATGC GGGAGCTGCG CCGGGGGGGG CAGATCTTCT TCGTCCACAA CCGGGTCCAG TCCATCATGA ACTGGGCCGA GCACCTGCGC CGCATCGTCC CCGAGGCGAA GATCGCCGTG GGGCACGGCC AGATGGACGA AGGGGAACTG GAGAAGGTGA TGCTCGGCTT CATGCACGGG GAGACCAATC TCCTGCTCTG CACGACCATA ATCGAGTCGG GGCTCGACAT CCCCAACGCC AACACCCTCA TCATCGACCG GGCGGACACC TTCGGCCTGG CCCAGCTCTA CCAGCTTCGG GGTCGCGTCG GGCGCTCCAA GCAGCGGGCC TACGCCTACC TGCTGATCCC CGGCGAAGGG GCCATCTCGT CCGATGCCCG TGAACGGCTG AAGATTATTC AGGAACTGAC GGAACTCGGC GCCGGTTTCC GGCTCGCCAC CCATGATCTC GAAATCCGCG GCGCCGGCGA CATCCTCGGG GCCAAGCAGT CGGGGAACAT AGCCGCCGTT GGCTTTGACC TCTACACGGA GCTCCTGGAG GAGGCGATCC AGAACCTGAA GGGTGAGGAA CGGCTGGAGC GGGTGGAGCC GGAGATCAAC CTCCGCATCC CCGCCTTCGT TCCCGAGGAT TACGTCCGGG AGCCGAACCA GCGGCTTATC ATCTACAAGA AGCTCACCCA GGCCGAAAGC GAGGAAGAAG TGGACGAAGT CATGGCGGAA CTGGTGGACC GCTTCGGCAA GCTTCCCCTG GCCGCCACGT ACCTCCTGGA AGTGATGAAG CTGCGGATTC ACTTCAAGCG CTTCCTGATC ACCATGGCGG AATTCGACGG CAGGCGCCTC TGCCTCAGCT TCCACCAGAA GACGCCGGTC CCTCCGGATA CCATCATCGG ACTCATCCGT TCAAACCCGA AGCGATACCA GTTCTCACCG GACTTCCGGC TTACGGCGGA GCTTGCCGAC ACCTCCTTCG AGGGGGTCCT GGAAGAGGCC AGAAATCTCT TGAAAAGGCT TGGGTGA
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Protein sequence | MPLVDSQLID RITGHLAPKT GRVTLTGLKG SAPAYLLAQL LKTAERPLLV IAPDADRAAE ICTELRFFSG RPFDVLSFPA WDVAPFEKGS PHADVTGQRL ACLRRLMDRK TAAVVTTPDA LRQRVLPRTM LDNASLYFLP GEESNRDEFL AKLVTLGYLN VPLVEDRGTF AVRGGIVDIF PPGFEQPVRI EFFGDFVETI RAFDPLSQRS LAPLEELLLL PSREMVLTDE VLKSASHHIK ARCDELEISP VARRELLEQL QQGLYPTGVE WLLPLFHPRL ETLFDYAGDA VRVVLDPEAL AEEDERFDRE LVTAEDQARE RGDLFASPAE FFLTASETAG SIEAGRLVTI PYLTVTGESD EKTALALDIQ ENTDLKVDVS SDSERILKPL VTRLNGWLEE RQRVIVACHQ RGQAQRLYEL LSHYPLPLNI SDRPFPAERE RDDGKVDVVI GDLSRGFRLP EEKLIVIAEE EIFGRRQKRR GVSELRKKQI MTSLAELKPG DYMVHLDHGI GIYRGLQHIS LSGCAGDFIL LEYAGGDKLY LPVDRLNLVQ RYVGAEGLEP RVDKLGGTSW EKAKGKARAA VQEMAGELLQ IYAARQLHEG HAFSPPDDLY REFEASFAYE ETSDQMSAIM DVIGDMTSAK PMDRLVCGDV GYGKTEVAMR GAFKAVMDGK QVAVLVPTTV LAQQHLETFK ARLGAYPVTV EMLSRFRTPK EQKEILEKVK KGAIDVIIGT HRLLQSDVTF KDLGLLIVDE EQRFGVTHKE KLKKYKAVVD ILTLTATPIP RTLYMSMMGI RDLSIIDTPP VDRLAVKTFV ARSSDDLIRE AVMRELRRGG QIFFVHNRVQ SIMNWAEHLR RIVPEAKIAV GHGQMDEGEL EKVMLGFMHG ETNLLLCTTI IESGLDIPNA NTLIIDRADT FGLAQLYQLR GRVGRSKQRA YAYLLIPGEG AISSDARERL KIIQELTELG AGFRLATHDL EIRGAGDILG AKQSGNIAAV GFDLYTELLE EAIQNLKGEE RLERVEPEIN LRIPAFVPED YVREPNQRLI IYKKLTQAES EEEVDEVMAE LVDRFGKLPL AATYLLEVMK LRIHFKRFLI TMAEFDGRRL CLSFHQKTPV PPDTIIGLIR SNPKRYQFSP DFRLTAELAD TSFEGVLEEA RNLLKRLG
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