| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3350 |
|---|
| Symbol | |
|---|
| ID | 3740665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 3767589 |
|---|
| End bp | 3769364 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637780639 |
|---|
| Product | NADH dehydrogenase I, F subunit |
|---|
| Protein accession | YP_386287 |
|---|
| Protein GI | 78224540 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1149] MinD superfamily P-loop ATPase containing an inserted ferredoxin domain
[COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.50901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.051471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAAG CTATAAAGAT TCTGATTTGT CAGGGGACAG GCGGCGTATC GGCCGGTGCA
AAAAAGGTCG AGGCCGAATT TAATCGGATA ATTTCCGAAA GAGGCGTCAA CGCCGTTGTG
GGCAAGCGTT GCGACATTAT TAAGACTGGC TGCCGCGGAC TCTGTGCAAA CGATGTTCTC
GTCGATATCG TGGATCCTGA GCTTGGACGG GTCACCTATG ATTTTGTGCA GCCAGAAGAA
GTAGCGCAGC TCGTTGATGA ACACATCATC AAGCGCACGC CTTTGGAAAA GCGAAAGGCA
AAACCTTATT ACAATACATT TGTCGATCAA CAAATGCGGA TTGTTATGAC CGGTTGCGGT
CAGATTGATC CCGAGAGCCT TGACGCCTAT CTGGCAGAAG ATGGATTCAA GGCCATCGAA
AAATGCGTGA AAGAGATGAC TCCGGCTGCG GTTATCGATG AGGTCAAGAA GGCGGGTCTG
CGCGGCCGTG GGGGGGGGGG CTTTCCCACC GGCATGAAGT GGTCCTTTTG TGCTGCTACA
CCCGGGAAGC TTAAATATTT GATCTGTAAT GCTGACGAAG GGGATCCCGG GGCCTTCATG
GACCGTTCGA TCCTTGAGGG TGACCCCTAC TGCATCATCG AGGGGATGAT GATTGCGGCG
TATGCGATCG GTTGCTCTAA GGGGTACGTT TACGTACGCG CAGAGTATCC GCTGGCGATT
GAGCGCCTCC AAAAGGCCCT TGATGTATGC CGTGAGAAAG GCTATCTCGG GCACAATATA
CAAGGTTGGG GCTTTGACTT TGACCTGATT ATCAAAAAGG GTGCCGGTGC CTTCGTGTGC
GGTGAAGAGA CTGCGCTCAT GGCTTCCATC GAAGGTGAAC GAGGCATGCC ACGCCCCCGG
CCACCGTTCC CTGCGGTCAA GGGCTTGTGG GCCAAGCCGA CCAACATCAA TAACGTTGAG
ACGTTTGCCA ACGTCCGTCA CATAATCAAC AAGGGAGCTG AGTGGTATGC CTCCCTCGGA
ACTGACACGA CCAAGGGGAC CAAAATTTTT GCCGTCACTG GCAAGGTAAA ACACACGGGC
CTTGTTGAGG TTCCTGCAGG CATGACAGTT CGCGATGTTA TTTATAATGT CTGCGGTGGG
ATTGCGAATA ATCGCAAATT CAAGGCGGTA CAGGCGGGTG GGCCCTCTGG TGGCTGTATC
CCTCCTGAAG TGCTTGATAC TCCCGTTGAC TACGATTCAT TGATTAAGGC CGGAGCCATG
ATGGGTTCGG GTGGTCTGGT CGTCATGGAC GAGACAACCT GTATGGTCGA CGTTGCCCGC
TTCTTCCTTT CGTTCACCAG AATGGAGTCT TGCGGGAAAT GTGTCCCCTG CCGGATTGGC
CTCAAGGTTA TGCTTGACAT TCTGGAGAGA ATTACCGCAG GCCGCGGCCA GGCGGGCGAC
ATTGAGACTC TTCTGGAGAT GGGCAGTACC ATCAAGAAGG CTTCTTTATG TGGCCTCGGC
CAAACAGCGC CGAACCCTAT TCTCTCGACC ATTCGCTATT TCCGGGAAGA GTACGAAGCC
CACATCACCG ATAAACGCTG CCCGTCAAAC TGCTGCAAGG AACTACTCCT GTGGCAGGTA
ATAGAGGAAA AGTGCGTTAA GTGCGGTGCG TGCTTCAAAG CGTGTCCGGT AGACGCAATT
GTCTGGGAAA AGGGACAGGT TGCCTATTTG GACAAGGAAA AGTGTACAAA ATGTAAGTCG
TGTTATGACG CCTGTCGGTT CATGGCGATT GAGTAA
|
|---|
| Protein sequence | MGEAIKILIC QGTGGVSAGA KKVEAEFNRI ISERGVNAVV GKRCDIIKTG CRGLCANDVL
VDIVDPELGR VTYDFVQPEE VAQLVDEHII KRTPLEKRKA KPYYNTFVDQ QMRIVMTGCG
QIDPESLDAY LAEDGFKAIE KCVKEMTPAA VIDEVKKAGL RGRGGGGFPT GMKWSFCAAT
PGKLKYLICN ADEGDPGAFM DRSILEGDPY CIIEGMMIAA YAIGCSKGYV YVRAEYPLAI
ERLQKALDVC REKGYLGHNI QGWGFDFDLI IKKGAGAFVC GEETALMASI EGERGMPRPR
PPFPAVKGLW AKPTNINNVE TFANVRHIIN KGAEWYASLG TDTTKGTKIF AVTGKVKHTG
LVEVPAGMTV RDVIYNVCGG IANNRKFKAV QAGGPSGGCI PPEVLDTPVD YDSLIKAGAM
MGSGGLVVMD ETTCMVDVAR FFLSFTRMES CGKCVPCRIG LKVMLDILER ITAGRGQAGD
IETLLEMGST IKKASLCGLG QTAPNPILST IRYFREEYEA HITDKRCPSN CCKELLLWQV
IEEKCVKCGA CFKACPVDAI VWEKGQVAYL DKEKCTKCKS CYDACRFMAI E
|
|---|
| |