Gene Gmet_3285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3285 
Symbol 
ID3741006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3694914 
End bp3696743 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content55% 
IMG OID637780575 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_386223 
Protein GI78224476 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCAG GTGAACCTCG AAACGGAAAA CAGGTTGTCA TGGATCAAGA GGAAATAATG 
GAGAGAAACG GCGCTTCTGA AAATATGCAC AAAAAGGCCG GGGAGGCTGG AATTATCCGA
CTTGACGCCG AACTGGGGAT CGTCTCCCTG GACGAAACCT CCGGAAGCCT GATCGGAAGC
CCTCCCGAAT CTCTTCTGGG ACGGAGAATC GACGGGATAG TCGACTTGGC GAACCTGGGC
AAACTGATGC ACAACGGCAT CAGCTTCAGC AATCAGGTCA TCGTTGCCGG TGACCGGCGT
CTCGCCTGCG ATTACGTCCC CATCGTGGAG GATGACAGGA TTGTCGGCGG AGTATTGACG
GTACTCGGCG TACTCCCCAA GGAGACCGAC GGCTCTTCGG ACGACCTCAA GGAACTTCTT
CGCTCTGCCG GCGCTTTCAT GGACCTCGAC TATCACGGCA TCATCATCCT CGACCGCAAC
GGCACGGTCG TAATGGTAAA CCAGTCCTTT GCCGAGGTGC TCGACGCCAC CCCGCAGACC
ATGATCGGCA AGCATGTCCA TCAGGCTTAT CATAATTCAC AACCCTCCCG GATGCCGGTC
GTGATGGAAA CCGGCAAACC GGAGATCAGC TCCCACTACA TGAACGGCAA AGAGGTCTTT
GCCAGCCGCT ACCCTCTTAT CAAGCAGGGG AAAGTGATCG GTTGCGTGGG AAAGATTCTT
TTCAAGGATG TCCGCGAGAT CTCACTCCTC GCGAATCGGC TGCAGAGTGC CCGAGAGAAA
AAAACTCCCG CGAGAGCAAT TGCGGAAAAA GGTTCCCTTT TCAAATACGA CATTGACAGC
ATTGTGGGGC AGAGCGCCAA AATCGCCGAA CTGAAGGAGA CCCTTCTCAG GGTAGCCCCC
AAGAACTCCA ACGTTCTCTT GAGGGGAGAG AGCGGGACGG GGAAGGAACT CTGCGCCCAT
GCCATCCACG CTGCCAGCAC ACGACGCTAC GCCCCCTTCG TCAAGGTGAA CTGCGCCGCC
ATCCCTGACC ACCTCCTGGA ATCGGAACTC TTCGGTTACG CGGACGGGGC CTTTACCGGG
GCCAAAAAAG GAGGGCAGGT CGGCAAGTTC GAGCTGGCCG ACACCGGCAC CATCTTTCTT
GACGAGATCG GTGACATGCC CCTTGCCATG CAGGCAAAAC TTCTCCGAGT TCTTCAAGAG
CGGGAACTGG TCCCCTTGGG AAGCACCGTC CCAAAGGTAG TTGATGTGCG AGTCGTGGCG
GCAACCAACA GCAACCTCGA ACAGTTGGTC AGCGAAGGGA AATTCAGGGA GGACCTCTAT
TATCGGCTTA ATGTGGTCGC CCTTACCATT CCTGCGCTGA AGGACAGAAT GGAAGACATC
TACATCATCA CGAAAAATTT CATTGATCAT TTCAACGCTG AATTCGGCCT CTCCGTCCAG
GGAATCGACA GTGAAGCGTG GGAGGTCCTC AAGCACCACA ACTGGCCCGG CAATATCCGC
GAGCTTCGCA ACGTGCTCGA AAGCGCCTTC AATGCAGTAA GCGGCCCTCT CATCACCAAA
GAAAACCTCC CAATCCGTCT CGCCCAACTC TGCCCACATT CCACGCTGCC CCATGAGTTT
GCGCCTGGAG AGGATCTGGA AAGTTACATT CGACAGCACC TGGGAAAGAA AAACATTAGT
GATATGATGG ACGACCTTGA ACGGGTAATC CTGGAAAAAG CCCTTGAAAT CTGCAACGGC
AACAAGCTCC ACGCCGCTCA ACTCCTCGGC ATATCCCGCC CAGGTCTCTA CAAAAAGCTC
CAGAAGTACC CCTCACTGGA AAAAACATAA
 
Protein sequence
MQAGEPRNGK QVVMDQEEIM ERNGASENMH KKAGEAGIIR LDAELGIVSL DETSGSLIGS 
PPESLLGRRI DGIVDLANLG KLMHNGISFS NQVIVAGDRR LACDYVPIVE DDRIVGGVLT
VLGVLPKETD GSSDDLKELL RSAGAFMDLD YHGIIILDRN GTVVMVNQSF AEVLDATPQT
MIGKHVHQAY HNSQPSRMPV VMETGKPEIS SHYMNGKEVF ASRYPLIKQG KVIGCVGKIL
FKDVREISLL ANRLQSAREK KTPARAIAEK GSLFKYDIDS IVGQSAKIAE LKETLLRVAP
KNSNVLLRGE SGTGKELCAH AIHAASTRRY APFVKVNCAA IPDHLLESEL FGYADGAFTG
AKKGGQVGKF ELADTGTIFL DEIGDMPLAM QAKLLRVLQE RELVPLGSTV PKVVDVRVVA
ATNSNLEQLV SEGKFREDLY YRLNVVALTI PALKDRMEDI YIITKNFIDH FNAEFGLSVQ
GIDSEAWEVL KHHNWPGNIR ELRNVLESAF NAVSGPLITK ENLPIRLAQL CPHSTLPHEF
APGEDLESYI RQHLGKKNIS DMMDDLERVI LEKALEICNG NKLHAAQLLG ISRPGLYKKL
QKYPSLEKT