Gene Gmet_3279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3279 
Symbol 
ID3740999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3688154 
End bp3689980 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content59% 
IMG OID637780568 
ProductGAF sensor signal transduction histidine kinase 
Protein accessionYP_386217 
Protein GI78224470 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00154728 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCTC AGAATCAATT CAAGATAGCC AGCAATGCGA TTCGGATAGC CAACTCCACC 
GAACACCCTC ACCATGTCCG GCTGAAAGCC TTCGCGCACC TCATTACCGA AGCCTTCCAC
TGCTCATCGG CGACCATCTA CCTGGCCGAC GAGAGAGACC ACCTGCTCCA CCGAAAGATA
TCCACTCTCC TCCCCGACGA AATCAGCGAT TGCATTATCC CCTTCGGCAA GGGAGTTGCA
GGACGATGCG CGGCGCATGC CAGACCAATC TACCGCGGAA TCTCGTCATT GCACCCCCAC
GAGCCCTCCC TGGGCACCGA ACACCAAGTA CATGCCCACC CCATCATCGA CGGAGAGCGA
CTGCTGGGGG TCCTGACCAT CGGCCTCCCC GACACCACCC TTCTCGACGG GGAGGATCTC
GAACTTCTGC AGGTCCTCTT GATCGAGGCC GCCGGCATTA TCCGCCGCAA GCGCTCCCGC
GATGACATGA ACAAGCGGCT TGAGGAGTTT TCTTTCCTCT ACCGCATCAG CAACGCGATG
CTCTCCACCA TCAAGCTGAA CCGACTCGTG CACCTGATTC TTTCAGCCAT CACGTCGGGG
ACCCCCCCTG TTTTCGACCG TGCCATGCTC TTTCTGGCCA ACGAACGGAC CGAGATCCTC
CAGGGAATGA CCGGCATCGC CCGGGCCGGG GGACCTGAAC CGCCGGCGGA CCTGCCACCC
GCCCCCACGC CGGATTCCCT GAACGTATCA GACGAAGAGA TTGCCCTCCT ACAGCAAACC
GAATTTTGCA GACTTGTCAA GGCGACGCGG CTTCCCCTGG ACAGCACCCA GAACCACATC
TCCAAGGCAG TGCTCGACAG GCAGCTGGTC CTTGTCCGCG CCCCCCGTCG CGAATCCCCC
ATTGACCGAT CCTTCAACCG GAAGTTCGGC GGTACCCCAT TCGCCATCGC CCCACTCATC
GCCCACAATC AGGTCATCGG CGCCATCGTC GTCGACAACT GCACCAGCGG ACGCCCCATC
ACCCCCGATG AACTCAATCT GCTGCAACTG TTCACCAACC AGGCGGGAAT GGCGGCGGAA
AACTCCATCC TCTACAACCG GCTCGAAGAA ACCAACCGCA ATCTCCACGA GACCCAGGAG
CGCCTCCTGC AGGGGGAGAA ACTGGCTGCC ATCGGCCAGA TGGCCGCCGG AATCGCCCAC
GAGATCAAGA ACCCTCTCGT TTCGGTAGGG GGCTTTGCGG GACGGCTGAA AAGGAGATTC
CCCGCCGATA CCGAGGAATG GCAATACGCG GATCTCATCA CCCGTGAAGT CCAGCATCTG
GAAACCATGC TGACCGACAT CCTCTTCTTC TCGAAGAAGA CGACCATCTG CTACAGCCGG
TGCAGCATTA ACCAGATTAT CGAAGACGCC CTCTCGGTGG TCGCTCTCCC CATCGAGGAA
AAAGGAATTA AGGTTGAAAA AATCCTGGCA TCGCGCCTCC CCTCGGTCCT GGGCGACTAC
CAGCAGATCC GCCACGTTTT CATCAACCTG TTCAGCAACG CCAATGACGT CATGGAGCCT
GGGGGCGTCC TGGAAATCGA GTCCCTCCCC GCCCAGATCG ACGGAAGCCG AGCCGTCTCA
GTCAAGGTTT CCGACACAGG AGCAGGGATT CTCCTTGAAC ATATCCATAC CCTCTTCAGC
CCCTTCTTCA CCACGAAGGA AAAAGGGACC GGCCTCGGTC TGGCTATCGC CCACAAGATC
ATAACGGCCC ATGGAGGCAC CATCACGGTT AAAAACCGCG AGACCGGAGG AGCTGAATTC
ACCGTCGTCA TCCCGGTATC CCCCTAA
 
Protein sequence
MAAQNQFKIA SNAIRIANST EHPHHVRLKA FAHLITEAFH CSSATIYLAD ERDHLLHRKI 
STLLPDEISD CIIPFGKGVA GRCAAHARPI YRGISSLHPH EPSLGTEHQV HAHPIIDGER
LLGVLTIGLP DTTLLDGEDL ELLQVLLIEA AGIIRRKRSR DDMNKRLEEF SFLYRISNAM
LSTIKLNRLV HLILSAITSG TPPVFDRAML FLANERTEIL QGMTGIARAG GPEPPADLPP
APTPDSLNVS DEEIALLQQT EFCRLVKATR LPLDSTQNHI SKAVLDRQLV LVRAPRRESP
IDRSFNRKFG GTPFAIAPLI AHNQVIGAIV VDNCTSGRPI TPDELNLLQL FTNQAGMAAE
NSILYNRLEE TNRNLHETQE RLLQGEKLAA IGQMAAGIAH EIKNPLVSVG GFAGRLKRRF
PADTEEWQYA DLITREVQHL ETMLTDILFF SKKTTICYSR CSINQIIEDA LSVVALPIEE
KGIKVEKILA SRLPSVLGDY QQIRHVFINL FSNANDVMEP GGVLEIESLP AQIDGSRAVS
VKVSDTGAGI LLEHIHTLFS PFFTTKEKGT GLGLAIAHKI ITAHGGTITV KNRETGGAEF
TVVIPVSP