Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_3085 |
Symbol | |
ID | 3740783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | - |
Start bp | 3482224 |
End bp | 3484941 |
Gene Length | 2718 bp |
Protein Length | 905 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637780373 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_386024 |
Protein GI | 78224277 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGTTTGG CCGAAAAATC CGACAAGATT CTGCGATATC TGCCGTCGCC TAAAAAGCAG CTGCTGGCCC TTCTCCTCAT TGTTTTCGTC ATCGAGTTGT TCCTCATGGT GCTGCTGCCG CGAACCGCGG ATGGCGGCAC TCCCCTGGCC ATCTCCCTCC TCGACGCGCT TCTCCTCGTC ATCCTTTCGG CCCCCATCAT CTGGTTGAGC ATTGTCCGTC CGCTGCGGAG CGTGGCATTC ACCGCCTCGC TGCACACCGA TCTCCTCCTC GATCACATCG CCGACGGCAT CATAAGTTTT GACGGAGCCG GCCGCCTCCT CTCCCTCAAC CCCGCTGCCG AGCAGCTCTT CGGCTACCAG AGTGCCGAGG CAACGGGACG CTCCCTTGGC GATATCCTGG CAATCAGGTC GACGGGGAAG GATAATCCTC TCCTTACCCC CCTTGTCTGC TGCGGCGAGG AACATTCCCG CCTGACCTGC GAGGCGGAGG GGATCCGGAG CGACGGGAGC CGTTTCCCGG CCGCCCTTTC CCTGAGCCGG GTGCAGATGA AGGGTGTCTG GCACTTTCTC GGCATTGTTC GCGATGTTAC CGAGAGCAGG GAGACCGGTG AGCGGCTCCG CGAAACCAAT GAAAAGCTTG ACACCCTGAT CCAGGCCTCG CCCCAGGGTA TCGTGGCGGT GGACTGCGGT GGGAAGGTGA CCCTCTGGAA CCGGGCTGCC GTGGAAATCT TCGGCTGGAG CGCCGAGGAG GTGCTGGGAA AACCCTATCC CGTCGCCCCG GCGGAGCGGG CGGCAGAGCA CCGGAAGCTG CGGGAACTGG TCCTCCAGGG GAAGAGGATC ACCGACGTGG AACTTCGTCG CCGGCGCAAG GATGGCTCCC CCATCGACGT GAGCCTCTCG GCGGCCCCCA TCTGCGACGG CTCGGGCACA CCGCTCGGGG TCATCACCAT CATCTCCGAC ATCTCGGCCA GAAAACGCAA TGAGCAGGAG CTGGTTCTCC TCAAGCGGGC CATGGAGTCG AGCATCAACG GCATAACCAT CACCGACGCC ACCCATCCCG ACAACCCCAT CATCTACGTG AACCCGGCCT TCGAACGGAT CACCGGCTAC GGCGTCGATG AGGTGATCGA CAAGAACCCC CGCTTCCTCA GGGGCGACGA CCGGGACCAG GCCGAGCTCA AGAAGCTCGT GCAGGCCTTC AAGGAGGAGC GGGAAGGGTG CTTCGTGCTC CGCAACTACC GCAAGGATGG CTCCCCCTTC TGGAACGAGC TCTTCATCGC TCCCGTCCGG GACCGGGACG GCGTGGTGAC CAACTACATC GGGGTCATGA ACGACATCAC CGAGCACCGC CGCTACGAGG AGCAGCTGGT CTACCAGGCG ACCCACGACC CCCTCACGGG GCTCCCCAAC CGCAACCTCC TCCAGGATCG CCTCGGCCAG GCCCTGGCCC TGGAAGCGTT CCGGCGCCGC AACCCCATCT GCGTCATGTT CCTGGACCTG GACAACTTCA AGAAGGTGAA CGACACCCTG GGACACACGG TGGGGGACAT GCTCCTGAAG GCGGTGGCCA ACCGGCTCAA GAACTGCCTG CGGGGAGGAG ACACGGTGGC GCGGCTCGGC GGCGACGAAT ACATCATCGT GCTCCCCAAC GTGCGGGAAG TGCCTGACGT CATCACCGTG GCCAAGAAGA TGATCAACGT CTTCGCGGCG CCGCTCCTCC TCATGGGGAA CGAGATCTAC GTCACGGCCA GTATCGGCAT CGCCCTCTTC CCCACCGACG GCGAGACCGT GGACGCGCTC CTCAAGAACG CCGACGCCGC CATGTACCAC GCCAAGGAGC AGGGGAAGAA CAACTACCAG TTCTACTCGG CGGAGATGAA CATCCGGGTC TTCGAGCGGC TCTCCCTGGA GACGAGCCTC CACCGGGCCG TGAAGAATCA GGAGTTCTTG CTCCACTACC AGCCCCGGGT CGACCTGCGG AACGGCCGGA TCTGCGGCGT GGAGGCCCTG GTGCGCTGGA ACCACCCGGA GATGGGGCTC GTGTCGCCGG CCAAGTTCAT CCCCCTAGCC GAGGAGACGG GGCTCATCGT TCCCATGGGC GAGTGGGTTC TCAGGACCGC CTGCGCCCAG AACAAGGCCT GGCAGGATGC TGGTCTGCCG CCGCTCCGCA TGGCCGTCAA CCTCTCGGCC CGCCAGTTCC GGCAGGAAAA CCTCATCGCT ATGGTGGAGG AGATTCTCAT GGAGACGGGG CTCGCCCCCC AGTGGCTGGA GCTGGAGCTG ACCGAGAGCC TCGTCATGCA GGAGGCGGAG AAGTCGGCCG CCATCCTCCG CGAACTGACG GACCGGGGGA TCGAGGTGGC CATCGACGAC TTCGGCACCG GCTATTCATC CCTCAGCTAC CTGAAGCGCT TCCCCATCGC CAACCTGAAG ATCGACCAGG CGTTCATCCG CGACATGACC CGGGACCCCG ACGACGCCAC CCTCGTGAAG ACCATCATCA CCATGGCCCA CGGCCTCGGC ATGAAGACCA TCGCCGAAGG GGTCGAGCTG GCGGAGCAGA TCGACTTCCT CTGCCGCCAC CAGTGCGAGG AGATGCAGGG GTACTACTTC AGCCGCCCCA TCACCGCCGA AGAGCTCGGC CGGCTCCTGG CCGACGGGAA GACCCTTGAT CTCTCTCCCG TCAATGTGGA TCCCCGTGAC CGTATCCGGG CGGTGTAA
|
Protein sequence | MGLAEKSDKI LRYLPSPKKQ LLALLLIVFV IELFLMVLLP RTADGGTPLA ISLLDALLLV ILSAPIIWLS IVRPLRSVAF TASLHTDLLL DHIADGIISF DGAGRLLSLN PAAEQLFGYQ SAEATGRSLG DILAIRSTGK DNPLLTPLVC CGEEHSRLTC EAEGIRSDGS RFPAALSLSR VQMKGVWHFL GIVRDVTESR ETGERLRETN EKLDTLIQAS PQGIVAVDCG GKVTLWNRAA VEIFGWSAEE VLGKPYPVAP AERAAEHRKL RELVLQGKRI TDVELRRRRK DGSPIDVSLS AAPICDGSGT PLGVITIISD ISARKRNEQE LVLLKRAMES SINGITITDA THPDNPIIYV NPAFERITGY GVDEVIDKNP RFLRGDDRDQ AELKKLVQAF KEEREGCFVL RNYRKDGSPF WNELFIAPVR DRDGVVTNYI GVMNDITEHR RYEEQLVYQA THDPLTGLPN RNLLQDRLGQ ALALEAFRRR NPICVMFLDL DNFKKVNDTL GHTVGDMLLK AVANRLKNCL RGGDTVARLG GDEYIIVLPN VREVPDVITV AKKMINVFAA PLLLMGNEIY VTASIGIALF PTDGETVDAL LKNADAAMYH AKEQGKNNYQ FYSAEMNIRV FERLSLETSL HRAVKNQEFL LHYQPRVDLR NGRICGVEAL VRWNHPEMGL VSPAKFIPLA EETGLIVPMG EWVLRTACAQ NKAWQDAGLP PLRMAVNLSA RQFRQENLIA MVEEILMETG LAPQWLELEL TESLVMQEAE KSAAILRELT DRGIEVAIDD FGTGYSSLSY LKRFPIANLK IDQAFIRDMT RDPDDATLVK TIITMAHGLG MKTIAEGVEL AEQIDFLCRH QCEEMQGYYF SRPITAEELG RLLADGKTLD LSPVNVDPRD RIRAV
|
| |