Gene Gmet_3085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3085 
Symbol 
ID3740783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3482224 
End bp3484941 
Gene Length2718 bp 
Protein Length905 aa 
Translation table11 
GC content64% 
IMG OID637780373 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_386024 
Protein GI78224277 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTTGG CCGAAAAATC CGACAAGATT CTGCGATATC TGCCGTCGCC TAAAAAGCAG 
CTGCTGGCCC TTCTCCTCAT TGTTTTCGTC ATCGAGTTGT TCCTCATGGT GCTGCTGCCG
CGAACCGCGG ATGGCGGCAC TCCCCTGGCC ATCTCCCTCC TCGACGCGCT TCTCCTCGTC
ATCCTTTCGG CCCCCATCAT CTGGTTGAGC ATTGTCCGTC CGCTGCGGAG CGTGGCATTC
ACCGCCTCGC TGCACACCGA TCTCCTCCTC GATCACATCG CCGACGGCAT CATAAGTTTT
GACGGAGCCG GCCGCCTCCT CTCCCTCAAC CCCGCTGCCG AGCAGCTCTT CGGCTACCAG
AGTGCCGAGG CAACGGGACG CTCCCTTGGC GATATCCTGG CAATCAGGTC GACGGGGAAG
GATAATCCTC TCCTTACCCC CCTTGTCTGC TGCGGCGAGG AACATTCCCG CCTGACCTGC
GAGGCGGAGG GGATCCGGAG CGACGGGAGC CGTTTCCCGG CCGCCCTTTC CCTGAGCCGG
GTGCAGATGA AGGGTGTCTG GCACTTTCTC GGCATTGTTC GCGATGTTAC CGAGAGCAGG
GAGACCGGTG AGCGGCTCCG CGAAACCAAT GAAAAGCTTG ACACCCTGAT CCAGGCCTCG
CCCCAGGGTA TCGTGGCGGT GGACTGCGGT GGGAAGGTGA CCCTCTGGAA CCGGGCTGCC
GTGGAAATCT TCGGCTGGAG CGCCGAGGAG GTGCTGGGAA AACCCTATCC CGTCGCCCCG
GCGGAGCGGG CGGCAGAGCA CCGGAAGCTG CGGGAACTGG TCCTCCAGGG GAAGAGGATC
ACCGACGTGG AACTTCGTCG CCGGCGCAAG GATGGCTCCC CCATCGACGT GAGCCTCTCG
GCGGCCCCCA TCTGCGACGG CTCGGGCACA CCGCTCGGGG TCATCACCAT CATCTCCGAC
ATCTCGGCCA GAAAACGCAA TGAGCAGGAG CTGGTTCTCC TCAAGCGGGC CATGGAGTCG
AGCATCAACG GCATAACCAT CACCGACGCC ACCCATCCCG ACAACCCCAT CATCTACGTG
AACCCGGCCT TCGAACGGAT CACCGGCTAC GGCGTCGATG AGGTGATCGA CAAGAACCCC
CGCTTCCTCA GGGGCGACGA CCGGGACCAG GCCGAGCTCA AGAAGCTCGT GCAGGCCTTC
AAGGAGGAGC GGGAAGGGTG CTTCGTGCTC CGCAACTACC GCAAGGATGG CTCCCCCTTC
TGGAACGAGC TCTTCATCGC TCCCGTCCGG GACCGGGACG GCGTGGTGAC CAACTACATC
GGGGTCATGA ACGACATCAC CGAGCACCGC CGCTACGAGG AGCAGCTGGT CTACCAGGCG
ACCCACGACC CCCTCACGGG GCTCCCCAAC CGCAACCTCC TCCAGGATCG CCTCGGCCAG
GCCCTGGCCC TGGAAGCGTT CCGGCGCCGC AACCCCATCT GCGTCATGTT CCTGGACCTG
GACAACTTCA AGAAGGTGAA CGACACCCTG GGACACACGG TGGGGGACAT GCTCCTGAAG
GCGGTGGCCA ACCGGCTCAA GAACTGCCTG CGGGGAGGAG ACACGGTGGC GCGGCTCGGC
GGCGACGAAT ACATCATCGT GCTCCCCAAC GTGCGGGAAG TGCCTGACGT CATCACCGTG
GCCAAGAAGA TGATCAACGT CTTCGCGGCG CCGCTCCTCC TCATGGGGAA CGAGATCTAC
GTCACGGCCA GTATCGGCAT CGCCCTCTTC CCCACCGACG GCGAGACCGT GGACGCGCTC
CTCAAGAACG CCGACGCCGC CATGTACCAC GCCAAGGAGC AGGGGAAGAA CAACTACCAG
TTCTACTCGG CGGAGATGAA CATCCGGGTC TTCGAGCGGC TCTCCCTGGA GACGAGCCTC
CACCGGGCCG TGAAGAATCA GGAGTTCTTG CTCCACTACC AGCCCCGGGT CGACCTGCGG
AACGGCCGGA TCTGCGGCGT GGAGGCCCTG GTGCGCTGGA ACCACCCGGA GATGGGGCTC
GTGTCGCCGG CCAAGTTCAT CCCCCTAGCC GAGGAGACGG GGCTCATCGT TCCCATGGGC
GAGTGGGTTC TCAGGACCGC CTGCGCCCAG AACAAGGCCT GGCAGGATGC TGGTCTGCCG
CCGCTCCGCA TGGCCGTCAA CCTCTCGGCC CGCCAGTTCC GGCAGGAAAA CCTCATCGCT
ATGGTGGAGG AGATTCTCAT GGAGACGGGG CTCGCCCCCC AGTGGCTGGA GCTGGAGCTG
ACCGAGAGCC TCGTCATGCA GGAGGCGGAG AAGTCGGCCG CCATCCTCCG CGAACTGACG
GACCGGGGGA TCGAGGTGGC CATCGACGAC TTCGGCACCG GCTATTCATC CCTCAGCTAC
CTGAAGCGCT TCCCCATCGC CAACCTGAAG ATCGACCAGG CGTTCATCCG CGACATGACC
CGGGACCCCG ACGACGCCAC CCTCGTGAAG ACCATCATCA CCATGGCCCA CGGCCTCGGC
ATGAAGACCA TCGCCGAAGG GGTCGAGCTG GCGGAGCAGA TCGACTTCCT CTGCCGCCAC
CAGTGCGAGG AGATGCAGGG GTACTACTTC AGCCGCCCCA TCACCGCCGA AGAGCTCGGC
CGGCTCCTGG CCGACGGGAA GACCCTTGAT CTCTCTCCCG TCAATGTGGA TCCCCGTGAC
CGTATCCGGG CGGTGTAA
 
Protein sequence
MGLAEKSDKI LRYLPSPKKQ LLALLLIVFV IELFLMVLLP RTADGGTPLA ISLLDALLLV 
ILSAPIIWLS IVRPLRSVAF TASLHTDLLL DHIADGIISF DGAGRLLSLN PAAEQLFGYQ
SAEATGRSLG DILAIRSTGK DNPLLTPLVC CGEEHSRLTC EAEGIRSDGS RFPAALSLSR
VQMKGVWHFL GIVRDVTESR ETGERLRETN EKLDTLIQAS PQGIVAVDCG GKVTLWNRAA
VEIFGWSAEE VLGKPYPVAP AERAAEHRKL RELVLQGKRI TDVELRRRRK DGSPIDVSLS
AAPICDGSGT PLGVITIISD ISARKRNEQE LVLLKRAMES SINGITITDA THPDNPIIYV
NPAFERITGY GVDEVIDKNP RFLRGDDRDQ AELKKLVQAF KEEREGCFVL RNYRKDGSPF
WNELFIAPVR DRDGVVTNYI GVMNDITEHR RYEEQLVYQA THDPLTGLPN RNLLQDRLGQ
ALALEAFRRR NPICVMFLDL DNFKKVNDTL GHTVGDMLLK AVANRLKNCL RGGDTVARLG
GDEYIIVLPN VREVPDVITV AKKMINVFAA PLLLMGNEIY VTASIGIALF PTDGETVDAL
LKNADAAMYH AKEQGKNNYQ FYSAEMNIRV FERLSLETSL HRAVKNQEFL LHYQPRVDLR
NGRICGVEAL VRWNHPEMGL VSPAKFIPLA EETGLIVPMG EWVLRTACAQ NKAWQDAGLP
PLRMAVNLSA RQFRQENLIA MVEEILMETG LAPQWLELEL TESLVMQEAE KSAAILRELT
DRGIEVAIDD FGTGYSSLSY LKRFPIANLK IDQAFIRDMT RDPDDATLVK TIITMAHGLG
MKTIAEGVEL AEQIDFLCRH QCEEMQGYYF SRPITAEELG RLLADGKTLD LSPVNVDPRD
RIRAV