Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_3042 |
Symbol | |
ID | 3741238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 3428975 |
End bp | 3429859 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637780331 |
Product | tyrosine recombinase XerD subunit |
Protein accession | YP_385982 |
Protein GI | 78224235 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00000138339 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.959316 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAGG AGATAGCAGC CTTCATCCGG CACCTGGAAA CGGAGCGCAA CGTCTCGCCC CACACCCTCG CCGCCTACCG CTCGGACCTG GCCCAGTTCC GGGAGTTCGT CCGGCAGGAA ACGGGAGCGG CGGCGGAACC GGAAGGGGTT TCGCACCTCC TGATCCGGCG CTGGCTCGCG CTCCTGCACC GGGACCACAC CAAAAGCTCC GTGGGGCGGA AGCTAGCGGC GGTGCGGGCC TTTTTCAAGC ACTTGATCCG GACCGGGCGC CTCGTCAAGA ATCCCGCCGA GCTCGTCTCC ACCCCCAAGA AGGAAAAGAA GGTCCCCTAT CACCTCTCCA TCGACGAGGC GACCGCCCTG GTGGAAACCC CAAAGGAGCC GGACATCCTG AGCCTGCGGG ACCGGGCCAT CCTCGAAACC CTTTACTCCT GCGGCGTCCG GGTGTCTGAA CTGACCGGCC TGAACATAGG GGGGATCGAC CTGGATGACG GCACCGCGCG GGTTCTCGGC AAGGGGGGAA AGGAGCGGAT CGTGCCGGTG GGAAGCATCG CCCGCGCCGC CCTCTCCCAC TACCTGACCG CCCGAAACCA TCCCCCCCTC GACGCCCCCC TCTTCACCAA TGCCCGGGGG GGACGCCTCA CCCCCCGCAG TGTCCGGCGC GTGGTGGACA AGCATATCCT CCGGATCGCC GCCATGCGAA AGATTTCCCC CCACACCCTC CGGCACACCT TCGCCACCCA CCTGCTGGAA GGGGGAGCCG ACCTGCGAGC CATCCAGGAG CTTCTGGGGC ACGCCTCCCT CTCCACGACC CAGAAGTACA CCCATGTCGG CATCGACCGC CTCATGGAAG TCTACGACAA GGCCCACCCC AAGGCCCGGA AATAA
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Protein sequence | MEQEIAAFIR HLETERNVSP HTLAAYRSDL AQFREFVRQE TGAAAEPEGV SHLLIRRWLA LLHRDHTKSS VGRKLAAVRA FFKHLIRTGR LVKNPAELVS TPKKEKKVPY HLSIDEATAL VETPKEPDIL SLRDRAILET LYSCGVRVSE LTGLNIGGID LDDGTARVLG KGGKERIVPV GSIARAALSH YLTARNHPPL DAPLFTNARG GRLTPRSVRR VVDKHILRIA AMRKISPHTL RHTFATHLLE GGADLRAIQE LLGHASLSTT QKYTHVGIDR LMEVYDKAHP KARK
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