Gene Gmet_3006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3006 
Symbol 
ID3740995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3390705 
End bp3391709 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content63% 
IMG OID637780295 
Productintegron integrase 
Protein accessionYP_385946 
Protein GI78224199 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02249] integron integrase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value0.976928 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCCCA TCAACATGGG CAAAAACGCC TCTGCTGTCG AACCCGAAAA ACCCCGCCTC 
CTGGATATCC TCCGCACCAG AATCCGCCTC AAACATTACA GCCTCCGCAC GGAGCAGACT
TACACCGAAT GGGCGAAGCG CTACATTCTC TTCCATGGCA AACGCCATCC CGCCGAGATG
GGGAAGGAAG AGGTGGAGGC GTTTCTCTCC CATCTGGCGG TGAAGCACAA TGTCTCGGCC
TCGACCCAGA GCCAAGCCCG GGCCGCGATT CTTTTTCTCT ACCGCGAGGT ACTCGACATT
GAACTCCCCT GGCTGGACGA TGTGGAACAG GCGAAGAAGC CCCAACGGCT GCCGGTGGTG
CTGACGGTAA GCGAGGTGCA GGCTCTCCTC TCCCGCCTGA CCGGAACCCA TGCGCTGATG
GGGCGACTGA TGTACGGTAC CGGCATGCGC CTGATGGAGA CGGTGCGGCT GCGGGTGAAG
GATGTGGATT TCGAGCGGAG CGAGATCATC GTCCGGGAAG GTAAGGGTGC AAAGGATCGG
ATCACCATGC TCCCCCAAGC GGTTGCGGCC CCGCTGCGGG AGCACCTGGG GCGGGTGGAG
GCTCTTCACG GGGCGGATTT GAGGGCCGGC TTCGGCGAGG TCCACCTCCC CCATGCCCTC
GGGAAGAAGT ACCCGAACGC GGGTCGGGAA TGGGGATGGC AGTATGTGTT CCCGGCAAAG
CAGCTTTCGA CGGACCCGCG CACGGGGGTA ACCCGTCGGC ACCACGCTGA CGAGAAGGGA
ATCCAGCGGG CCATCCGTCA GGCAGTGCGG GACGCGGAGC TTGCCAAGCC AGCCACTCCC
CACACGCTAC GGCACTCCTT CGCGACGCAC CTGCTCCAGT CGGGCTACGA TATCCGCACG
GTGCAGGAAC TTCTGGGCCA CAAGGATGTG CAGACGACGA TGATCTACAC CCATGTGCTG
AACCGTGGCG GCAAAGGGGT GGAAAGTCCC CTTGATCGGC TGTAG
 
Protein sequence
MHPINMGKNA SAVEPEKPRL LDILRTRIRL KHYSLRTEQT YTEWAKRYIL FHGKRHPAEM 
GKEEVEAFLS HLAVKHNVSA STQSQARAAI LFLYREVLDI ELPWLDDVEQ AKKPQRLPVV
LTVSEVQALL SRLTGTHALM GRLMYGTGMR LMETVRLRVK DVDFERSEII VREGKGAKDR
ITMLPQAVAA PLREHLGRVE ALHGADLRAG FGEVHLPHAL GKKYPNAGRE WGWQYVFPAK
QLSTDPRTGV TRRHHADEKG IQRAIRQAVR DAELAKPATP HTLRHSFATH LLQSGYDIRT
VQELLGHKDV QTTMIYTHVL NRGGKGVESP LDRL