| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2854 |
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| Symbol | |
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| ID | 3741161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 3233085 |
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| End bp | 3233924 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637780140 |
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| Product | sigma 32 (RpoH) |
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| Protein accession | YP_385797 |
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| Protein GI | 78224050 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000000000132969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0000000816438 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCATGA ATCTCCCCGT TGTTGCCGAC AGCTTCACCC TCTACCTGGC GGAAATCAGG
AAGTTCCCCG TCCTCACCCC CGAGGAGGAA CACCTGTACG CCGTAAAGTT CTATGAAGAG
AAGGACCTGG AGGCGGCCCA CCGCCTCATC ACCGCCAACC TCCGATTTGT GGTGAAGGTC
GCTGCCGAGT ACAAATCCTA CGGCATGAAG ATGCTCGACC TGATCCAGGA GGGGAACATC
GGCCTCATGA TGGCGGTCCG CAAATTCGAC CCCCACAAGG GGATCCGTCT CATCTCCTAC
GCGGTCTGGT GGATCAGGGC CTACATCCAG AATTACATCA TCTCTGCCTG GAGCCTTCTC
AAGATCGGCA CCACCCAGGC CCAGAAGAAA CTCTTCTTCA AGCTGAACCA GGCCAAGAAT
GCCATCCGGC GGCTGACCGG GGGTGACGAC ACGGAAGCCA CCGCCCTCTC CCTCCACGTG
AAAGAGTCGG AAGTGATCGA AATGGACCAG CGGATGCGGG GCGACTACTC TCTGGACGCT
GAACTGGTGG ACGGGGAAGG GCTCACCATG CTGGATACCC TTGTGGACGA GCGCCAGAAC
CAGGAGGAAG CCTTGGCAGA GCAGCAGGAG GCGTCACGCC TCCACGGCCA GGTGACCCAG
GCACTGGAAC GGCTCAACGA AAAGGAGCGC TACGTAGTCG AGAATCGGGT AACGGCAGAC
GAACCACTTA CCCTCCAGGA GATCGCCGAC CATTTCGCAA TCTCCCGCGA GCGGGTCCGT
CAGATTGAGG AAGGGGCACT GAAAAAGATA AAGGCCTATC TGACGCCAAT AACTGTCTAG
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| Protein sequence | MTMNLPVVAD SFTLYLAEIR KFPVLTPEEE HLYAVKFYEE KDLEAAHRLI TANLRFVVKV
AAEYKSYGMK MLDLIQEGNI GLMMAVRKFD PHKGIRLISY AVWWIRAYIQ NYIISAWSLL
KIGTTQAQKK LFFKLNQAKN AIRRLTGGDD TEATALSLHV KESEVIEMDQ RMRGDYSLDA
ELVDGEGLTM LDTLVDERQN QEEALAEQQE ASRLHGQVTQ ALERLNEKER YVVENRVTAD
EPLTLQEIAD HFAISRERVR QIEEGALKKI KAYLTPITV
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