| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2728 |
|---|
| Symbol | |
|---|
| ID | 3740035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 3083292 |
|---|
| End bp | 3085307 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637780013 |
|---|
| Product | NAD-dependent DNA ligase C4-type |
|---|
| Protein accession | YP_385671 |
|---|
| Protein GI | 78223924 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAA ACGCCGCCGA GCGGCGCATT GCTGAGTTGC GCGCCGAGAT CAGGCGCCAT
GACCACCTCT ATTACGTCCT CGACCGCCCC GAGCTCACCG ACGCGGAATA CGACGCTCTC
TATCGCGAAC TGCTGAAGCT GGAAGAGGAG CATCCCGAGC TGGTCACCCC CGACTCCCCT
AGCCGGCGGG TGGGGGGGGC ACCCCTGGAG AAGTTCAAGC AGGTGACCCA CCGGATCCCG
ATGCTCTCAC TGGAAAACGC CTTTACCGAT GGCGATATCG CCGAGTTTGA CGCCCGGGTG
AAGCGCGCCC TGGCGCTTCC GGCCGGGGAA GAGATCGCCT ACGTGTGCGA ACCGAAGCTG
GACGGGCTTG CGGTGGAACT GGTCTATGAG TACGGCACGC TCACCGTGGG CTCCACAAGG
GGCGACGGGG TCGTGGGGGA GAACGTTACC CAGAACCTGA AAACCGTCAA GAGCATCCCC
CTGCGGCTCG AAGGGGAGAA TCCCCCGGAG CTCCTGGAGG TGCGGGGCGA AGTGTTTCTC
CCCCTGGCGG CCTTCCAGCG GCTGAACGCC CAGCGGGAGG AGGAGGGAGA GCCCCCCTTC
GCCAACCCCC GCAACGCGGC GGCGGGCTCC CTCCGGCAGT TGGACTCGCG CATCACGGCC
CGGCGCCCCC TCACCATGTT CTGCTATGCG CCGGGAGAGA TTCGCGGCGC CGATTTCGGC
AGCCAAGGCG AGTTCCTCTC CGCCCTCCGG CAGCGGGGGC TTCCGGTGAC CTCCCTGGCA
CGTCAGGTGA CGGGAGTCGC CGGGGTCCTC GCCTACTATC GCGAAATGAC CGAAAAGCGC
GACACCCTCC CCTACGAGAT CGACGGGGTG GTGGTGAAGG TGGACTCCTT TCCCCTCCAG
CGAGAACTGG GAGAAAAGAG CCGCTCTCCC CGCTGGGCCG TGGCGGTAAA GTTCCCCCCC
CGCCAGGCGG TCACGGTCAT CGAGGACATC GTCCCGTCCG TGGGGCGCAC CGGGGTCATC
ACCCCCACGG CGAACCTGCG CCCCGTGGAG GTTTCCGGGG TCACCGTCTC CCGGGCCACC
CTCCACAACT GGGAGGAGAT GGAGCGCAAG GACATCCGCA TCGGCGACAC GGTAGTGATC
GAGCGGGCCG GCGACGTGAT CCCGGCGGTG GTTAAGGTGC TGACGGAGAA ACGCTCGGGG
AGCGAGCGGT TCCTCCCCAT TCCCGCCGCC TGCCCCGAGT GCGGCTCCGA GGTGGTGAAG
ATCCCCGACG AGGTGGCGGT CCGCTGCATG GGACTCTCCT GCCCGGCCCA GATCCGGGAG
TCCATCATCC ATTTCGCCTC CCGCAACGCC ATGGACATGG AGGGGCTCGG CGAGAAGTAC
ATCGAGCAGC TCCTGCGGCT GGGGCTCGTG GGTAACGTGG CCGACCTCTA CACCCTCACC
AGGGACGATT TCATGAAATT CGACCGGATG GGGGAGAAGC TGGCGGAGAA CCTCCTGAAC
GCCATCGAGG CCAGCAAGAA ACGGGAACTC TCCCGTTTCA TCTTCGCCCT CGGCATCCGC
CACGTGGGGG AGCACACGGC AAAGCTCCTG GCCACGGCCT TCGGGAGCAT CGACAACCTG
GCCCGGGCCA CGGAGGCGGA GCTCCTCTCC ATCCGGGAGA TCGGCCCCCA AGTGGCCCAA
AGCATCACCA CCTTCTTCCA CAACGAGGGG AACCGGGAGA CCATCCGGCG GATGGTGGAG
GCGGGGGTGG AGCCGACGGT GGAAGAGAAA AAGGTGGGGG GAAAGTTCAC CGGCAAGACC
TTCGTCTTCA CCGGTACGCT GATCCGCTTC AGCCGGAGCG AGGCCCAGAA GATGGTGGAG
AGCGAGGGGG GCCATGCGGC CGGGTCGGTA TCGAAGAAGA CCGACTACGT GGTGGCCGGG
GACGAAGCAG GGAGCAAGCT GGACAAGGCC CGGCAGCTGG GGGTCACGGT TCTCGCCGAG
GATGAATTTC TGCAGATGCT GGAGGGAGAG CAATGA
|
|---|
| Protein sequence | MDRNAAERRI AELRAEIRRH DHLYYVLDRP ELTDAEYDAL YRELLKLEEE HPELVTPDSP
SRRVGGAPLE KFKQVTHRIP MLSLENAFTD GDIAEFDARV KRALALPAGE EIAYVCEPKL
DGLAVELVYE YGTLTVGSTR GDGVVGENVT QNLKTVKSIP LRLEGENPPE LLEVRGEVFL
PLAAFQRLNA QREEEGEPPF ANPRNAAAGS LRQLDSRITA RRPLTMFCYA PGEIRGADFG
SQGEFLSALR QRGLPVTSLA RQVTGVAGVL AYYREMTEKR DTLPYEIDGV VVKVDSFPLQ
RELGEKSRSP RWAVAVKFPP RQAVTVIEDI VPSVGRTGVI TPTANLRPVE VSGVTVSRAT
LHNWEEMERK DIRIGDTVVI ERAGDVIPAV VKVLTEKRSG SERFLPIPAA CPECGSEVVK
IPDEVAVRCM GLSCPAQIRE SIIHFASRNA MDMEGLGEKY IEQLLRLGLV GNVADLYTLT
RDDFMKFDRM GEKLAENLLN AIEASKKREL SRFIFALGIR HVGEHTAKLL ATAFGSIDNL
ARATEAELLS IREIGPQVAQ SITTFFHNEG NRETIRRMVE AGVEPTVEEK KVGGKFTGKT
FVFTGTLIRF SRSEAQKMVE SEGGHAAGSV SKKTDYVVAG DEAGSKLDKA RQLGVTVLAE
DEFLQMLEGE Q
|
|---|
| |