| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2519 |
|---|
| Symbol | |
|---|
| ID | 3738570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2861199 |
|---|
| End bp | 2862347 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637779807 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_385465 |
|---|
| Protein GI | 78223718 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000015375 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.24357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTAT CAAAAATATG CATGCATGCC TTGCTTCTTT TCGCGGTTCC CCTTGCCGGT
TGCAAGGGAG ACGAAGCGAA GAAGTCCCCG GCGGTGAAAC CGCCGGTGGC GGTGGAGGTC
ATTGCCGTTG CCCCCCGGGA CCTGGTGGAA GGGGTCGAGG TGACCGGCAG CCTGGAACCG
AAGTTCTATG CCGATGTGAA GACCCAGATT CCGGGGCTCG TGAAGCAGGT CTATGTGACT
GAATGGCTGC GGGTCCGCAA GGGGACCCCC CTTGCCCGAA TCGACGTGGC CGAGGCGGAG
GCAATGGTGA AGCGGGCTGA GGCGTCGGTG GAGTCGGCCC GGGCCGGCTT GGCCCAGGCC
CAGGTGGGGG CAAACCGGGC GGAGCGGGAG CTGACCCGGA TTCTCAAACT GAAGGAATCG
GGGCTCGCGA CTCAGCAGGG GGTAGACGAC GCCCGCACCG AGTCGGCCGC GGCTCAGGCC
AGGATAGAGG CGGCCCAGGC CCAGATCCGG GTGGCCCAGG AAGAGGTGCG CCAGGCCCGG
GCACGGCAGG CAAAGGGGCT TGTGGTCTCT CCCCTCGATG GAGTAGTGGC CCTGCGGGAT
GTGAACGTGG GGGATCTGGC AAGCGACGCC GCCGCCAGCA AGCCCATATT CCGGATAGTG
GACAACCGTG TCCTTAACCT GACGGTCACC GTTCCCTCGG CCGATTCGGC CCGGGTCAAG
GTGGGACAGC CGCTGGAGTT CACCGTGGAC GCCCTCCCCG GGAAAACCTT CATGGGCAGG
GTGATGTACA TCAATCCGGA ACTCTCCTCT GCCGACCGGT CGCTGCGGGT GATCGCCGAA
GTGAGAAATG ACGGAGACCG CCTCAAGGGA GGGCTCTTCG CCAAGGGACG GATTATCACT
GGCCAGCGGC CCAAGGTGGT TCAGGTCCCC CGTGGGGCCT TGACCACGTG GGATACGGCG
GCCCGGAAGG GGAACCTGTT CATTGTCGCC GGCACCACCG CGAAGCTCAG GCAGGTGGAG
ACCGGAGCCG TCAGCGGCGA TTCAGTGGAG ATCGTGAAAG GGGTAGGGGC CGGCGAGCAG
ATCGTGGCCC GCGGAGGCTT CAACCTCAAG GACGGGGATA CGGTTTCCGT TGCCGGTGGA
AGGAAGTAG
|
|---|
| Protein sequence | MNVSKICMHA LLLFAVPLAG CKGDEAKKSP AVKPPVAVEV IAVAPRDLVE GVEVTGSLEP
KFYADVKTQI PGLVKQVYVT EWLRVRKGTP LARIDVAEAE AMVKRAEASV ESARAGLAQA
QVGANRAERE LTRILKLKES GLATQQGVDD ARTESAAAQA RIEAAQAQIR VAQEEVRQAR
ARQAKGLVVS PLDGVVALRD VNVGDLASDA AASKPIFRIV DNRVLNLTVT VPSADSARVK
VGQPLEFTVD ALPGKTFMGR VMYINPELSS ADRSLRVIAE VRNDGDRLKG GLFAKGRIIT
GQRPKVVQVP RGALTTWDTA ARKGNLFIVA GTTAKLRQVE TGAVSGDSVE IVKGVGAGEQ
IVARGGFNLK DGDTVSVAGG RK
|
|---|
| |