Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_2403 |
Symbol | |
ID | 3740441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | - |
Start bp | 2716531 |
End bp | 2717334 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637779695 |
Product | tetratricopeptide TPR_4 |
Protein accession | YP_385353 |
Protein GI | 78223606 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0000143988 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGATA CGTTCGACGA ACTTCTGGCA AAGGGGATCA GTCTCGCTGA GGCGGGCGAC TACACGGGTG CCGCCGCGCA GTTCAGGGAG TGCGTGGAGC GCGAACCCGA TAATGCCGAA GGGTACTTTT ACCTTGGAGA AGCATTGAGC GAGGAGGGGA AGCTCCAGGA CGCCCTCAAG GAATACGAGA AGGGGCTGAA GCTTGCTCCC GATGACCTCG ACGCCCTCAC CGCTGTGGGA GACATCAAGT TCGAGCTGGG GCAGTACAAG GAGGCCCTGG CGGCCTACCA GCGGGTGGTG GCGCTCGACC CTGACAACTC CGATGCCCAT GTGAACATCG GCCTTGTTTA CAATAGCCTG GAGCGGACCC AGAAGGCGAT CAAGGCCTTC GAGAAGGCCC TTGAGATAGA CCCGGCCAAC GTCTTTGCCT ACAACGGCCT TGGCGATGCC TGGTATGGCC TCGACGAGCA CGAGAAAGCC ATCGCCGCCT TCCAGAAGGG GATCGAACTG GACCCGGACG ACGCCGCGGC CCACTTCAAC CTGGGTGAGC TTTACTATGA CCTTGGCGAG CACGATGAGG CCGAGCATGA GTGCCTGGAG GCCGTGCGGC TCGACCCCGC CTTCAGCATG TCGTATCTCA CCCTTGGCAG CCTCTATATG GATAACGAGC GGGTCAAGGA CGCCATCAGG TACCTGGAAC TCTATCTCAG GCACGAGAAG TCTCCCCAGG CCAAGGAAAC CGTTGCCGAG GTGCAGGCAG TGCTCGAAGG ACTCAGGGCG GAAGTGGACT CGACTAATGG CTGA
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Protein sequence | MADTFDELLA KGISLAEAGD YTGAAAQFRE CVEREPDNAE GYFYLGEALS EEGKLQDALK EYEKGLKLAP DDLDALTAVG DIKFELGQYK EALAAYQRVV ALDPDNSDAH VNIGLVYNSL ERTQKAIKAF EKALEIDPAN VFAYNGLGDA WYGLDEHEKA IAAFQKGIEL DPDDAAAHFN LGELYYDLGE HDEAEHECLE AVRLDPAFSM SYLTLGSLYM DNERVKDAIR YLELYLRHEK SPQAKETVAE VQAVLEGLRA EVDSTNG
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