| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2206 |
|---|
| Symbol | |
|---|
| ID | 3739579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2496807 |
|---|
| End bp | 2497571 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637779498 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_385158 |
|---|
| Protein GI | 78223411 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.0824665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.00853535 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGG ACATATTCAA TCTGGAGGGG AAGGTTGCCA TAGTAACCGG AGGGAGCCGT
GGTTTCGGCA AAGCCATTGC CCTGGGGCTC GCTCAGGCGG GCGCCGACGT GGTCGTTGCC
AGTCGTACCC AGGCCGACCT GGATGCAGTG GCCGAGGAGA TAAGAGCTCT GGGGCGCAAA
TCGCTTGCCG TCGCTACTGA CATGCTCGAC CGGGGATCGA TTGAAAACCT GGCGGCAAAG
ACGATGGAGG CGTTCGGCAA GATCGACATC CTCGTCAACA ACGCGGGACA GGGGTGGACG
GTGCCGTTCC TGAAATGGAC CGATGAGCAG TGGGACCAGA TCCTGGATGT TAACCTCAAG
GGTTATTTCC TCTGTACCCA GATCGTCGGC CAGCACATGT TCAAGGCAAA AGCCGGGCGA
GTGATCAATA TCTCCTCGGC CATGGGGAGT TATCCGCTTC CCTACATGGT TCCCTACGCC
GCTTCCAAGG GGGGGATCAA CGCCATGACC AAATGTCTGG CGCAGGAATG GGCGACACGC
GGTATTACGG TGAATGCCAT CGCACCATCC TACTTTTCCA CTGACATCAA CAAGGATGCC
ATGGAGGATG AGGCGACCAC CAAGCTGATC ATGTCCAAGA CACCGGTGAA CCGCTGGGGG
AATGTGGAGG AACTGGTCGG TCTCGTTATC TACCTTTCGT CCAATGCATC GAGTTTCATG
ACCGGTGCGG TACTGCCGCT GGATGGAGGG TGGTCGGCCG GCTAG
|
|---|
| Protein sequence | MSLDIFNLEG KVAIVTGGSR GFGKAIALGL AQAGADVVVA SRTQADLDAV AEEIRALGRK
SLAVATDMLD RGSIENLAAK TMEAFGKIDI LVNNAGQGWT VPFLKWTDEQ WDQILDVNLK
GYFLCTQIVG QHMFKAKAGR VINISSAMGS YPLPYMVPYA ASKGGINAMT KCLAQEWATR
GITVNAIAPS YFSTDINKDA MEDEATTKLI MSKTPVNRWG NVEELVGLVI YLSSNASSFM
TGAVLPLDGG WSAG
|
|---|
| |