| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2173 |
|---|
| Symbol | |
|---|
| ID | 3739965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2454744 |
|---|
| End bp | 2456924 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637779467 |
|---|
| Product | parallel beta-helix repeat-containing protein |
|---|
| Protein accession | YP_385127 |
|---|
| Protein GI | 78223380 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.207249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0000037438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACA GAATTTTGTT CCTCATGGCG ATCCTCTCAA TTGTTCTGAT GGCGGTCGCA
CCCAAGGTTT TCGCCGCAAC TCCCGCAGTG CTTGATGTGA AACTCTTCCC GAGCTTCGAA
GCTGCCGTGG CCAGCAGCAG AACAGCCGGC AACGTCATTC TTGTGCGCAC GCCGGTCAGT
TGCACGAGTC TGACGGTTCC AACCGACAGG AAGATTTACG TCACTGCCAG CGGGTTGATC
ACCGTCAATG GGGTTCTGGA TTTCCAGGGG AACAGGCCTG ACGCGGGCGA CTATCGCATT
TTCAGCGGTA CGGGGAGCGT GGTCAATTTG AGCTCCGCCC GGATCAAGTG GTTCGGCGCG
CGGGGGGACG GGAAGACGGA GGAATCGGCC CTGGTGCAGA AGGCGATCAA CGCCGTTGCC
GAGGGAGATA TGCTCGTTAC CCGGGGCACC TACATCGTTG CGAATCTCCA GCTCAAAACG
GGGGTGAATA TCATCGGGCA GGGAGAGGGG TCGCTGCTGA AGCTGCCCCC GAATGCCCAC
GTGCGGAGCA TCAACGGCTC CGGCGCCGAC GACAAGGGGA ACTACGCGGC GAACGTTATT
GGCACGACCC TCAACCATCA TGGCGGAACC TGGTTCGACA ACGGCGCGCG GGCGAGGAAC
GAGAACAATT CGACCTATAT CGTGACCGAT GTGATCATCA GGGATCTGGT GATCGACGGG
AACAAGGCCC GGAATACCCT GGGCGATGTC GGGCAGAACG GCTCGGCAAT GGGCGCCGAC
ATCTCCCTGA ATCAGGCCGC CCGCATTACG GTCGAGAATT GCCTCCTGAT TAACGCGCGG
CTGGACGGGA TCCTCGTCGG GTATACCCTC CACGGCGGCA GCGATTACGT CACCATCAGG
AACTGCCGCA TAGAGAACAA CGTCCGGACT GGCATCGCCA TGATAACGGG TAAATACAAC
AAGATTCTCG ATTGCACGAT CAAGCATGCC GGGACGGGAG TCGGCATCGA TGTCGAAGCG
AACTGGGATG GAGAGATCAA TAACCATCAC CTGATCAAGG GAAACTACGT GCAGGCGGGG
ATTGCCCTCG CCTCGCCCCA GTTCGCCAGG ATGAACGATA CGACCGTGGA GGGTAACACC
ATTGTCGGCG GACCGGGCCG CAACGGCATC ACGGTGTCAT CAAGCCGGGT AAACGGCGGC
ACGCTCATTA CCAACAACAA GCTCATCGGC GGCGGGGGAG GCTCGGCGTT CGTGATAAAC
GGAGACGCCG GTCCGACGGA AGGGTTCTCT CCCATCGTCG TAAGCTTCAA CGATGCGTCA
AACTACGATT ACATCCTTCC CGAGCAACCC AACGGCAGCA TGGCGAACAT CACCATGCGC
GACAACCGTT TCACCACCAA ATACGGTCTC CAGCTGTACC GTCCCTACAA GTTCGAGTTC
AGCACCAACA CGGTCTTCTT CTCCGGCGGA ACGAACCTCA ATCCCCTGTT GTACATCCTC
TTCGGCCAGG CTTCGGTGGA CCCCAACCAG GGAGCCACAA TACTCAAGGG GAACACTTTC
AGGGGGAGGG GGATCAACAA GCTCGTGGAG GCGGTGGTCG GCGCCGATGC GCCCCCCATC
AAGCCCGATT CCCTGACAAT CGTCGGCAAC GACATCAACG TGACCACCAG CGCTCCCTAC
TCAATGGATC TGAATTACGC CGTCATCATC AAGGGGAACA AGATAGGGGG CTTCAACAAC
GGCATTCACT GCGTGGGGGG AATTGACGGC ATGGAGATAA TCGATAACGA GATTGTTTCG
ACCGTAAAAG ACGTGCCTTT GATAGTCAAC GACGGGCAAT TCAAGCATTC CAAAATTACC
GGGAACAAAC TCACCGGAAT AAATCTGACC GTAACAAGGC CTAACTACTG CGACATATCC
AATAATGTCG TGGTAAACGG CAAAGGGTCA ATTACCTATA CGTTCACCTC GGGCGGGGTC
GGCTCGAACA GCATTTCCGG CAACAGATTC ACTTCCGATA CCGACGTTGA CCGTCCGTTC
GAAATACTCG TTGGTTCAGG GTATTCAGAC AAGGATTTTT CCGGAGAGGA TATCATCAAG
AACAATACCT ACTCGGGAAA GTATAGCGGG CCGGCTTTCC TCAACTCGAC TCCCAAGAGC
GTGGCCGGCA ACTCTTTCTG A
|
|---|
| Protein sequence | MKYRILFLMA ILSIVLMAVA PKVFAATPAV LDVKLFPSFE AAVASSRTAG NVILVRTPVS
CTSLTVPTDR KIYVTASGLI TVNGVLDFQG NRPDAGDYRI FSGTGSVVNL SSARIKWFGA
RGDGKTEESA LVQKAINAVA EGDMLVTRGT YIVANLQLKT GVNIIGQGEG SLLKLPPNAH
VRSINGSGAD DKGNYAANVI GTTLNHHGGT WFDNGARARN ENNSTYIVTD VIIRDLVIDG
NKARNTLGDV GQNGSAMGAD ISLNQAARIT VENCLLINAR LDGILVGYTL HGGSDYVTIR
NCRIENNVRT GIAMITGKYN KILDCTIKHA GTGVGIDVEA NWDGEINNHH LIKGNYVQAG
IALASPQFAR MNDTTVEGNT IVGGPGRNGI TVSSSRVNGG TLITNNKLIG GGGGSAFVIN
GDAGPTEGFS PIVVSFNDAS NYDYILPEQP NGSMANITMR DNRFTTKYGL QLYRPYKFEF
STNTVFFSGG TNLNPLLYIL FGQASVDPNQ GATILKGNTF RGRGINKLVE AVVGADAPPI
KPDSLTIVGN DINVTTSAPY SMDLNYAVII KGNKIGGFNN GIHCVGGIDG MEIIDNEIVS
TVKDVPLIVN DGQFKHSKIT GNKLTGINLT VTRPNYCDIS NNVVVNGKGS ITYTFTSGGV
GSNSISGNRF TSDTDVDRPF EILVGSGYSD KDFSGEDIIK NNTYSGKYSG PAFLNSTPKS
VAGNSF
|
|---|
| |