Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_2055 |
Symbol | |
ID | 3738649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | - |
Start bp | 2308428 |
End bp | 2310230 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637779349 |
Product | transcriptional regulator |
Protein accession | YP_385009 |
Protein GI | 78223262 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0000658727 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.000375363 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATGTG CCGATGATAA TGCAATGGTC GGGTTGAATG AGAACCCGTC AGCAGAGCCG AGCAGTGCGG GAATTCTCTG CATAGACACT GATTTCGCGA TTGTTTCTCT TGACGAGACC ACTGGAAAAC TGCTGGGGGA GACTCCGGAA GCCCTGCTGG GGAAGAGAAT CGACGCTGTG GTCGATCTGG CGAATCTCGG CAACCTCATG CGAAGTGGCA ACAGTTTTAG CAGCCAGGTC ATAAAGTCGA AGACCGGCTC CATAGTCTGC GACTACGTAC CGATCATTGA CAACGACCGG ATCGTGGGAG GCACGCTTTC GCTCATCAGG ATGCTCCCCG ACGGCTTTCC CGACTCCTCT GACGAGTTGG GAGAAATTCT TCGCTCCGCC AATTCCTTCC TTAATTTTGA CCATGACGGC ATCATCGTTG TCGACCGCAA AGGGATCGTG GTCCTGGTTA ACCAGTCCTT CGCCAGGCTA TTCGAGACAA CACCCCAGGC CATGATCGGT AAGCACATCC GCCAGGCCTA CACCACTACT TCCCAGCCTT CACGCATGCC GACGGTTATG GAAACCGGCA AGCCCGAGAT CGGCGTTGCC CATTACCTGA ACGGCAAACA GGTCTACGCC AGCATCTTTC CCCTTATCAA GGATGGGAGG ATCATCGGCT GCGTGGGGAA GATCCTCTTC AGCGACATAC GGGAGATCAC TCTCATCGCC AACCGGCTCC AGGCCGCGGA ACCGCGGAAA CAGCACCGAC ACAGTGCGGG TTGCGAAATC CACTTCAAGT ACGACATCAA CAGTATCGTC GGCCAGAGCA AAAAGATTGT GGAGCTGAAG GAAACCCTGC TGCGGGTCGC CCTCAAGATG TCCAACATTC TCCTGCGCGG GGAGAGCGGC ACCGGCAAGG AGCTGTTCGC CCATGCCATT CACTCCGCCA GCAACCGGCG GTATGCGCCA TTCGTCAGCA TGAACTGCGC GGCCATTCCC GAGCATCTTC TGGAGTCGGA GCTCTTCGGT TATGTGGAGG GGGCTTTTAC CGGCGCCAAG AAGGGGGGGC AGCTTGGAAG GTTCGAGCAG GCCCATACCG GCACCATCTT TCTGGACGAG ATCGGTGACA TGCCGCTCTA CATGCAGGCC AAGATGCTGC GGCTGTTGCA GGAAAGGGAA CTGACGCCGC TGGGGAGCAC CATCCCTCGG AGCGTTGATG TCCGGGTGGT GGCGGCGACC AACAGCAATC TGGAGCAGCA GGTCAAGGAA GGAAAGTTCC GGGAAGATCT CTACTACCGG CTCAATGTGG TGACCTTCGC CATCCCTCCG CTTCGGGAGC GGATGGAGGA TATTCCGCTG CTCATCAGCA GCTTCGTCAG CAAGTTCAAC TCCGAATTCG GACTTGACGT GCAGGGGCTC GATGAAGAGG TATTGAATAT CATTAACCGC TACGATTGGC CCGGGAATAT CCGCGAGCTC CGCAATGTGA TCGAAAGCGC CTTCAACGTG GTTGTCGGGC CGCTGATCAA GAGAGAGCAT TTACCCGATC AGCTTTGTCT CCTGTTCCCC AGTGAAGGAG AGGGGGGGGG GCAAGCTACT GAACCGGGAG CAGAGGAATT TATTCGTGCC AGCCTCGGTA AAAAGGATAT CGGCCGGATT ATGGATGATT TCGAAAAGCT GCTCATCCAT GAGGCAATCG AGGTTAGCCA CGGCAATAAG GTCCATGCTG CCCACCTGTT GGGGATCTCC CGGCAGGGAC TCTATAAAAA ACTACATAAG CATGCCGATG AGGATGACCC CATCCAGTGC TGA
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Protein sequence | MKCADDNAMV GLNENPSAEP SSAGILCIDT DFAIVSLDET TGKLLGETPE ALLGKRIDAV VDLANLGNLM RSGNSFSSQV IKSKTGSIVC DYVPIIDNDR IVGGTLSLIR MLPDGFPDSS DELGEILRSA NSFLNFDHDG IIVVDRKGIV VLVNQSFARL FETTPQAMIG KHIRQAYTTT SQPSRMPTVM ETGKPEIGVA HYLNGKQVYA SIFPLIKDGR IIGCVGKILF SDIREITLIA NRLQAAEPRK QHRHSAGCEI HFKYDINSIV GQSKKIVELK ETLLRVALKM SNILLRGESG TGKELFAHAI HSASNRRYAP FVSMNCAAIP EHLLESELFG YVEGAFTGAK KGGQLGRFEQ AHTGTIFLDE IGDMPLYMQA KMLRLLQERE LTPLGSTIPR SVDVRVVAAT NSNLEQQVKE GKFREDLYYR LNVVTFAIPP LRERMEDIPL LISSFVSKFN SEFGLDVQGL DEEVLNIINR YDWPGNIREL RNVIESAFNV VVGPLIKREH LPDQLCLLFP SEGEGGGQAT EPGAEEFIRA SLGKKDIGRI MDDFEKLLIH EAIEVSHGNK VHAAHLLGIS RQGLYKKLHK HADEDDPIQC
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