| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2055 |
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| Symbol | |
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| ID | 3738649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | - |
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| Start bp | 2308428 |
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| End bp | 2310230 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637779349 |
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| Product | transcriptional regulator |
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| Protein accession | YP_385009 |
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| Protein GI | 78223262 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0000658727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.000375363 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATGTG CCGATGATAA TGCAATGGTC GGGTTGAATG AGAACCCGTC AGCAGAGCCG
AGCAGTGCGG GAATTCTCTG CATAGACACT GATTTCGCGA TTGTTTCTCT TGACGAGACC
ACTGGAAAAC TGCTGGGGGA GACTCCGGAA GCCCTGCTGG GGAAGAGAAT CGACGCTGTG
GTCGATCTGG CGAATCTCGG CAACCTCATG CGAAGTGGCA ACAGTTTTAG CAGCCAGGTC
ATAAAGTCGA AGACCGGCTC CATAGTCTGC GACTACGTAC CGATCATTGA CAACGACCGG
ATCGTGGGAG GCACGCTTTC GCTCATCAGG ATGCTCCCCG ACGGCTTTCC CGACTCCTCT
GACGAGTTGG GAGAAATTCT TCGCTCCGCC AATTCCTTCC TTAATTTTGA CCATGACGGC
ATCATCGTTG TCGACCGCAA AGGGATCGTG GTCCTGGTTA ACCAGTCCTT CGCCAGGCTA
TTCGAGACAA CACCCCAGGC CATGATCGGT AAGCACATCC GCCAGGCCTA CACCACTACT
TCCCAGCCTT CACGCATGCC GACGGTTATG GAAACCGGCA AGCCCGAGAT CGGCGTTGCC
CATTACCTGA ACGGCAAACA GGTCTACGCC AGCATCTTTC CCCTTATCAA GGATGGGAGG
ATCATCGGCT GCGTGGGGAA GATCCTCTTC AGCGACATAC GGGAGATCAC TCTCATCGCC
AACCGGCTCC AGGCCGCGGA ACCGCGGAAA CAGCACCGAC ACAGTGCGGG TTGCGAAATC
CACTTCAAGT ACGACATCAA CAGTATCGTC GGCCAGAGCA AAAAGATTGT GGAGCTGAAG
GAAACCCTGC TGCGGGTCGC CCTCAAGATG TCCAACATTC TCCTGCGCGG GGAGAGCGGC
ACCGGCAAGG AGCTGTTCGC CCATGCCATT CACTCCGCCA GCAACCGGCG GTATGCGCCA
TTCGTCAGCA TGAACTGCGC GGCCATTCCC GAGCATCTTC TGGAGTCGGA GCTCTTCGGT
TATGTGGAGG GGGCTTTTAC CGGCGCCAAG AAGGGGGGGC AGCTTGGAAG GTTCGAGCAG
GCCCATACCG GCACCATCTT TCTGGACGAG ATCGGTGACA TGCCGCTCTA CATGCAGGCC
AAGATGCTGC GGCTGTTGCA GGAAAGGGAA CTGACGCCGC TGGGGAGCAC CATCCCTCGG
AGCGTTGATG TCCGGGTGGT GGCGGCGACC AACAGCAATC TGGAGCAGCA GGTCAAGGAA
GGAAAGTTCC GGGAAGATCT CTACTACCGG CTCAATGTGG TGACCTTCGC CATCCCTCCG
CTTCGGGAGC GGATGGAGGA TATTCCGCTG CTCATCAGCA GCTTCGTCAG CAAGTTCAAC
TCCGAATTCG GACTTGACGT GCAGGGGCTC GATGAAGAGG TATTGAATAT CATTAACCGC
TACGATTGGC CCGGGAATAT CCGCGAGCTC CGCAATGTGA TCGAAAGCGC CTTCAACGTG
GTTGTCGGGC CGCTGATCAA GAGAGAGCAT TTACCCGATC AGCTTTGTCT CCTGTTCCCC
AGTGAAGGAG AGGGGGGGGG GCAAGCTACT GAACCGGGAG CAGAGGAATT TATTCGTGCC
AGCCTCGGTA AAAAGGATAT CGGCCGGATT ATGGATGATT TCGAAAAGCT GCTCATCCAT
GAGGCAATCG AGGTTAGCCA CGGCAATAAG GTCCATGCTG CCCACCTGTT GGGGATCTCC
CGGCAGGGAC TCTATAAAAA ACTACATAAG CATGCCGATG AGGATGACCC CATCCAGTGC
TGA
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| Protein sequence | MKCADDNAMV GLNENPSAEP SSAGILCIDT DFAIVSLDET TGKLLGETPE ALLGKRIDAV
VDLANLGNLM RSGNSFSSQV IKSKTGSIVC DYVPIIDNDR IVGGTLSLIR MLPDGFPDSS
DELGEILRSA NSFLNFDHDG IIVVDRKGIV VLVNQSFARL FETTPQAMIG KHIRQAYTTT
SQPSRMPTVM ETGKPEIGVA HYLNGKQVYA SIFPLIKDGR IIGCVGKILF SDIREITLIA
NRLQAAEPRK QHRHSAGCEI HFKYDINSIV GQSKKIVELK ETLLRVALKM SNILLRGESG
TGKELFAHAI HSASNRRYAP FVSMNCAAIP EHLLESELFG YVEGAFTGAK KGGQLGRFEQ
AHTGTIFLDE IGDMPLYMQA KMLRLLQERE LTPLGSTIPR SVDVRVVAAT NSNLEQQVKE
GKFREDLYYR LNVVTFAIPP LRERMEDIPL LISSFVSKFN SEFGLDVQGL DEEVLNIINR
YDWPGNIREL RNVIESAFNV VVGPLIKREH LPDQLCLLFP SEGEGGGQAT EPGAEEFIRA
SLGKKDIGRI MDDFEKLLIH EAIEVSHGNK VHAAHLLGIS RQGLYKKLHK HADEDDPIQC
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