| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1892 |
|---|
| Symbol | |
|---|
| ID | 3739169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2107631 |
|---|
| End bp | 2109415 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637779184 |
|---|
| Product | DNA helicase/exodeoxyribonuclease V, alpha subunit |
|---|
| Protein accession | YP_384846 |
|---|
| Protein GI | 78223099 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.087164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000000000433292 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCGC CTGAAACCAG CGACTACCGC GACATAGATT TCCGTTTCGC CGATTTTATC
TGCCGCCTTG CCGGGAACGG GAGCGATGAG TTGCGGCGGG CGGCCCTCCG GGTGAGCAAT
GCAGTTGGCC AGGGACACAT CTGTGTCGAC CTCGCCGCTG AAGCGGAAGG GGAAGAGGAG
AGCGGCTGCT ATACCGAACT CCTGCGCTCA TCCGGTGTTG TGGGAAGTCC CGGTGAATTT
GCCACGCTGA TCCTTGACGA TACCCGGCTC TACCTCTACC GATACTGGAA GTATGAGAGG
GAACTTGCTG AAAAAATAAG AGATAACGCT GGGCGGACCT ATCCGGTGGA TTGCCGTTTG
CTGGGAGAGG GGGTGGTACG GCTCTTCGGC CCTCCCACCG ATGGGGGGGA GACCGACTGG
CAGCGGATAG CGGCGGCAGC CGCACTGCGC AGCGGCTTCA CGGTCATTTC CGGCGGGCCG
GGAACCGGAA AGACCTCCAC CGTCGTCAAG ATCATCGCCC TGCTCCTGGA GCAATCCGGC
GACGACGGGC TGGGCATCGC CCTCACGGCG CCCACGGGAA AGGCTGCCGC GCGGCTCAAG
GATGCGATCC GCGGGGCCAG GGAAGGGCTT GCCGGCTTGA CCCCGGTGCA GGACCGGATT
CCTGATGATG TGACGACCAT CCACCGGCTC CTGGGGGTGA TTCCGGGGGC AAACCGTTTC
CGGTACAACC GGGGGAACCC GCTACCCCAC GACGTGGTGG TGGTCGATGA GGCCTCAATG
GTGGCACTCC CCCTCATGGC CCGCCTTGTG GAGGCAATGG CGCCCAAGGC CCGCCTCATC
CTCCTGGGGG ACCGGGATCA GCTCGCCTCG GTGGAAGCCG GCGCCGTCCT GGGCGACATC
TGCGACACTG GCGATACACC TATGTATTCG ACGGAGTTCC GTCGCTATGT TGAAGAGGCC
ACGGGGGAGC GTCTGGAAAT GGGCTCAGGT GATGAACCAC TTTCACCCCT TGCCGATTCC
CTAGTTATCC TCCGCAAAAA CTATCGTTTT GGTGCCGACA GCGGCATCGG CGCCCTCAGT
CGCGCCATCA ACGACGGGGA CGGGGACAGT GCTCTGGCGC TCCTTCGCGA AGAGGGCACC
TCCGGCGTTG CCTGGCGCGA AACCCCGTCC GTCGAAGCAC TGGAGCAGGC CCTTGCCCCC
GAGGTCATTT CGGGATACGG CGATTACCTC TCCCATGACG ATCCCGCAAC GGTCCTGGCC
GACTTCGACC GGTTCCGGGT GCTTTGCGTC GTGCGGGAAG GTCGGTATGG CGTTGCCGGC
CTCAATAGTG CAATCGAGCG GATACTTGCC GGCAGGGGGA TCATCTCTCC GAACCGGCGC
TGGTACCGGG GGCGGCCGGT CATGGTGACC GTCAACGATT ACGCTTTGCG ACTCTTCAAC
GGCGACGTCG GGATCACACT TCCCGACCCG GAGAATCCCG ATACCCTCGC TGTTTTCTTT
CCATCCGCAA CCGAAGGTGT CCGGAAGGTG TCGCCTCTGC GCTTGCCGCC CCACGAAACG
GTCTTTGCCA TGACGGTCCA CAAGAGCCAG GGGAGCGAGT TCGACAGGAT ACTCATGGTG
ATCCCCCCCG TCGAAAACCC GGTGCTGACC CGGGAACTGC TTTACACCGG CATCACCCGC
GCCCGCGCGG CGGCTGGACT CTGGTGCGGA GAAGCGGTGT TCAATGCCGC CGTGGCCCGC
CGGGTCGAGC GCAGGTCGGG TTTGCGGAAT GCTCTGACCA AGTAA
|
|---|
| Protein sequence | MMAPETSDYR DIDFRFADFI CRLAGNGSDE LRRAALRVSN AVGQGHICVD LAAEAEGEEE
SGCYTELLRS SGVVGSPGEF ATLILDDTRL YLYRYWKYER ELAEKIRDNA GRTYPVDCRL
LGEGVVRLFG PPTDGGETDW QRIAAAAALR SGFTVISGGP GTGKTSTVVK IIALLLEQSG
DDGLGIALTA PTGKAAARLK DAIRGAREGL AGLTPVQDRI PDDVTTIHRL LGVIPGANRF
RYNRGNPLPH DVVVVDEASM VALPLMARLV EAMAPKARLI LLGDRDQLAS VEAGAVLGDI
CDTGDTPMYS TEFRRYVEEA TGERLEMGSG DEPLSPLADS LVILRKNYRF GADSGIGALS
RAINDGDGDS ALALLREEGT SGVAWRETPS VEALEQALAP EVISGYGDYL SHDDPATVLA
DFDRFRVLCV VREGRYGVAG LNSAIERILA GRGIISPNRR WYRGRPVMVT VNDYALRLFN
GDVGITLPDP ENPDTLAVFF PSATEGVRKV SPLRLPPHET VFAMTVHKSQ GSEFDRILMV
IPPVENPVLT RELLYTGITR ARAAAGLWCG EAVFNAAVAR RVERRSGLRN ALTK
|
|---|
| |