| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1876 |
|---|
| Symbol | rph |
|---|
| ID | 3740278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2091189 |
|---|
| End bp | 2091905 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637779167 |
|---|
| Product | ribonuclease PH |
|---|
| Protein accession | YP_384830 |
|---|
| Protein GI | 78223083 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR01966] ribonuclease PH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000000148347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.00450296 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCGG ACGGCCGTGA GGCGGGGAGC CTCAGGGGCA TAAATATTAC TCGGCATTAT
ATCAAGCATG CGGAAGGGGC TGTGCTTGTG GAGTTTGGCG ACACCAAGGT CATCTGTACC
GCATCGGTGG AAGAGAGTGT CCCTCCATTT CTCCGGGGGA AGGGGACCGG TTGGGTGACT
GCCGAGTATT CGATGCTTCC CCGTTCGACT CACACGCGTT CTTCGCGCGA AGCTGCCCGT
GGAAAAATCG GTGGAAGGAC CCACGAAATA CAGAGGTTGA TCGGCCGTTC GCTTCGTGCC
GTCACAGATT TGACGCTTCT CGGGGAGAGA AGTGTCCTCA TAGACTGTGA TGTTATTCAG
GCTGACGGAG GAACCAGGAC TGCTTCCATA ACCGGAGCCT ATGTCGCTTT GGTGGATGCC
TTGCACTTGC TTGTGGAGCG TGGTGTGTTG CCGTTGCTCC CCATCAAGGA AGCCGTTGCG
GCGGTCAGTG TCGGAATAGT GGATGGCAAC ATTCTATTGG ATCTGAATTA CGTGGAAGAT
TCAGCGGCCG AAGTCGACAT GAATTTTGTC ATGACATCAT CTGACCGTTT TGTAGAAGTA
CAGGGTACTG CCGAGTCGGA ACCCTTTACC GTTGAACAGA TGGACGGCAT GCGTGTAGCT
GCAGTGGAGG GAATACGAAA GCTTTTCTCG ATTCAGAATG AGGCTCTTTC CCGATGA
|
|---|
| Protein sequence | MRSDGREAGS LRGINITRHY IKHAEGAVLV EFGDTKVICT ASVEESVPPF LRGKGTGWVT
AEYSMLPRST HTRSSREAAR GKIGGRTHEI QRLIGRSLRA VTDLTLLGER SVLIDCDVIQ
ADGGTRTASI TGAYVALVDA LHLLVERGVL PLLPIKEAVA AVSVGIVDGN ILLDLNYVED
SAAEVDMNFV MTSSDRFVEV QGTAESEPFT VEQMDGMRVA AVEGIRKLFS IQNEALSR
|
|---|
| |