| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1394 |
|---|
| Symbol | |
|---|
| ID | 3738615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1561466 |
|---|
| End bp | 1562563 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637778676 |
|---|
| Product | pilus retraction protein PilT |
|---|
| Protein accession | YP_384353 |
|---|
| Protein GI | 78222606 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACA TGCATCAGCT GCTCACGGAG CTCGTCAATC GTGGAGGGTC GGACCTCCAT
CTCACCACCA ACTCTCCTCC CCAGATCCGG ATCGACGGGA AACTGCTGCC CCTCGACATG
CCACCCCTGA ATGCGGTCGA TACGAAGCAG CTCTGCTACA GCATCCTTAC CGAGCAGCAG
AAGCACAAGT TCGAGGAGAA CAACGAGTTG GACCTCTCCT TCGGCATCAA GGGACTGTCA
CGTTTCAGGG GTAACGTCTT TGTCCAGCGG GGGGCCGTGG CCGGGGTGTT CCGGGTTATT
CCCTACAAGA TCCTCTCCTT CGAGGAACTG GGGCTCCCGC CGGTGGTGAG GGAGTTGGCC
GAGAAGCCCC GGGGCCTTGT CCTCGTCACC GGTCCCACCG GCAGCGGCAA GTCCACGACC
CTGGCCGCCA TTATCGACAA GATCAACACC GACCGCCACG AGCACATCGT CACCGTCGAG
GATCCCATCG AGTACCTCCA CCCCCACAAG AGCTGCGTGG TGAATCAGCG GGAGGTGGGA
GCCGACACCA AGAGCTTCAA AAACGCCCTC AAGTACATCC TCCGCCAGGA CCCGGACGTG
GTTCTCGTGG GGGAACTCCG GGACCTGGAG ACCATCGAGG CGGCCCTGAC CCTGGCCGAA
ACCGGTCACC TCTGCTTTGC CACGCTCCAT ACGAACTCCG CGGTCCAGAC CATCAACCGG
ATCGTGGATG TGTTCCCCTC CTACCAGCAG CCCCAGGTTC GCGCCCAGCT TTCCTTTGTC
CTCGAAGGTG TTCTCTCCCA AACCCTTCTT CCCAAAGCCA GCGGCACGGG GAGGGTGCTC
GCCATCGAGG TCATGGTGCC GAACCCGGCC ATCCGCAACC TGATCCGCGA GGACAAGATC
CATCAGATCT ACTCCCAGAT GCAGGTGGGG CAGGAGAAGT TCGGCATGAT GACCATGAAC
CAGTGTCTGT ACGGCCTGTT GCAGAAGCGG CACATCACCA TGGACGTCGG CATGGGGCGC
TCGCCTGATC CCGACGAGCT CAAGCAGATG CTTACCAGCG GTGTGCGGCC CCAGGCGCCG
CGCCCCCCCA TGAGATAA
|
|---|
| Protein sequence | MANMHQLLTE LVNRGGSDLH LTTNSPPQIR IDGKLLPLDM PPLNAVDTKQ LCYSILTEQQ
KHKFEENNEL DLSFGIKGLS RFRGNVFVQR GAVAGVFRVI PYKILSFEEL GLPPVVRELA
EKPRGLVLVT GPTGSGKSTT LAAIIDKINT DRHEHIVTVE DPIEYLHPHK SCVVNQREVG
ADTKSFKNAL KYILRQDPDV VLVGELRDLE TIEAALTLAE TGHLCFATLH TNSAVQTINR
IVDVFPSYQQ PQVRAQLSFV LEGVLSQTLL PKASGTGRVL AIEVMVPNPA IRNLIREDKI
HQIYSQMQVG QEKFGMMTMN QCLYGLLQKR HITMDVGMGR SPDPDELKQM LTSGVRPQAP
RPPMR
|
|---|
| |