Gene Gmet_1386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_1386 
Symbol 
ID3738607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp1550693 
End bp1552972 
Gene Length2280 bp 
Protein Length759 aa 
Translation table11 
GC content65% 
IMG OID637778668 
Product3'-5' exoribonuclease, VacB and RNase II:ribonuclease R 
Protein accessionYP_384345 
Protein GI78222598 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000570433 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.26711 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGGA ATCGGGAAAC GGTGCAGGCG GTGATCCGCG AGCGGGGCGG TTCTGCCCCT 
TTCCGGGAGC TGATGCTGGC TTTCGGGGTG ACCAAGGGGG AGCGGCAGAG TTTCAAGGGG
TTCGTGGACA AACTCGTCAC TGACGGCCAT CTCGTGCGAC TCAGGGGAAA CCGCTATGCC
CTGGCCGATG GGGAGAATCT CGTGACCGGG CGGCTCACGT GCCACCCGGA CGGCTACGGT
TTCGTCATTC CCGAAGGGGG AGGGGACGAC GTCTATATCC CGGCCCGGGC CCTTGCCGGG
AGCATGCACG GTGACACGGT GGAGGTGCGG GTCGAGACCT TCAAGGCCGG CGGCAAGAAG
GAGGGGCGGA TCGTGCGGAC CGTGACGCGG GGGCAAACCC GTGTCGTGGG GCGGTTCGAG
CAACTCAAGG GATTCGGGGT CGTGGTTCCC GATGAAACCC GCATCAGCCA GCAGATTGTC
ATCTCTCAGC AGGGAATCGG TCGGGCCAAG GGGGGACAGA CGGTCGTGGC CGAGATCACC
GCCTACCCCA CGGAGAAGCG CAGGCCCGAG GGGCGCATCG TGGAGGTGCT GGGGTGGCCC
GACGACCCTG AAGTGGAAGT CCGGACCATT ATCGCCAAGC ACGGGCTCCC CTTCGAGTTC
CCCGCCGAGG TGCTGGACGA GGCCCGGGCC GTTCCTCAGG CCATCGGGGA GAAGGATCTG
CAGGGGCGTA CCGATCTGCG GGAGATCGTG ACCGTCACCA TCGACGGCGA GACGGCCCGG
GACTTCGACG ATGCCGTGGC GGTCCGGAAG GAGCGGGGGG GGAACATCCG CCTCTGGGTC
TCCATCGCCG ATGTCTCCCA TTACGTGAAG CCCGACGCGC CCCTGGACCG GGAGGCGTAC
CTGCGGGGGA CCTCGGTCTA CTTTCCCGAC CGCTGTATCC CCATGCTCCC CGAGGAGCTT
TCCAACGGCA TCTGCTCCCT GAACCCCCGG GTGGAGCGGC TCACCATGAC GGCGGAGATG
CTCTTCACCC GCAGCGGCAC CATGAAAGAG GCCACTTTCT ACCCGAGCGT AATCAAAAGC
GACGCCCGGC TCACCTACAC CATTGTAAAA AAGATTCTCG TGGACGGCGA TGCCGAGGCC
ATGGCGGCTC ACCAGGAGCT GGTCCCTCAC CTGGAAGTCA TGCGGGAGTT GGCCCAGAGC
CTCACGGAGA AGCGGCGTAA GCGGGGGAGC ATCGACTTTG ATCTCCCCGA GCCCCAGATT
ATCCTCGATC TCCAGGGGGA GACCGTCGAC ATCATCCAGG CCGAGCGGAA CCTGGCCCAC
CGGATCATCG AGGAGTTCAT GCTGGCCGCC AACGAGGCGG TTGCATCCCA CATCGAGGCA
AAGGGAATCC CCTCCCTCTA CCGGGTCCAC GAGCCCCCTG ACCCGGCAAA GCTCATCGAC
TTCCAGGAGT TTATCTTCAA TTTCGGCTTC CACTTCCGGA TGGAGGGGGA CCGGGTGGAG
CCGGCGGAGA TCCAGCGGCT TCTGGTGGAG ACCGAGGGGA CGCCGGAGGA GCGGATGATC
AACCAGGTGC TCCTGCGGTG CATGAAGCAG GCCCGCTACA GTCACGAGAA CCTGGGGCAT
TTCGGGCTTG CGGCCCGCTG TTACACCCAC TTCACGTCCC CCATCCGCCG CTACCCTGAC
CTGGTCGTCC ACCGCATCCT CAAGGCGCTC CTGGCCGGGA AGATTACCGA CAAGGAGATC
GCACGGCTGG AGACAACCCT CCCCGAAACG GCGGAGCAGA CCAGCCGGCG GGAGCGGGTC
GCCATGGAGG CGGAGCGGGA GATCGTGGCC CTCAAAAAGG CCCAGTTCAT GCTCCAGAAG
ATCGGGGAGG ACTTCGACGG CTACATCACC GGGGTCACGT CCTTCGGCCT TTTTGTGGAG
CTGACGGAGA TATTCGTGGA GGGGATGGTC CACATCTCCA CCATGGGTGA CGACTACTAC
CGCTATGTGG AGAAACAGCA TTCCCTGGTG GGTGAGCGGA CGAAGGAGAC CTACCGGATC
GGCGACAAGG TGCGGGTGAC CGTGGCGGCG GTGAGCATCG AGAAGAAGCA GGTCGAGTTC
GTGCTGGCCG GGCTTCATGA GCGGCGGCCC GGTGCCTCGT CGCCGCCGGG GTCGGAGGAG
TACCCGCGGA TTGCCGTCAC GGGGAAGCGC CCCCGGGTTC TTGAAGAGCG ACGACGCCAG
TCGAAGGGAG ATAAGAAGGG AAGCGGCAAG GGGAAGGGGC CACGCGGGAG GCGCCGGTAA
 
Protein sequence
MKRNRETVQA VIRERGGSAP FRELMLAFGV TKGERQSFKG FVDKLVTDGH LVRLRGNRYA 
LADGENLVTG RLTCHPDGYG FVIPEGGGDD VYIPARALAG SMHGDTVEVR VETFKAGGKK
EGRIVRTVTR GQTRVVGRFE QLKGFGVVVP DETRISQQIV ISQQGIGRAK GGQTVVAEIT
AYPTEKRRPE GRIVEVLGWP DDPEVEVRTI IAKHGLPFEF PAEVLDEARA VPQAIGEKDL
QGRTDLREIV TVTIDGETAR DFDDAVAVRK ERGGNIRLWV SIADVSHYVK PDAPLDREAY
LRGTSVYFPD RCIPMLPEEL SNGICSLNPR VERLTMTAEM LFTRSGTMKE ATFYPSVIKS
DARLTYTIVK KILVDGDAEA MAAHQELVPH LEVMRELAQS LTEKRRKRGS IDFDLPEPQI
ILDLQGETVD IIQAERNLAH RIIEEFMLAA NEAVASHIEA KGIPSLYRVH EPPDPAKLID
FQEFIFNFGF HFRMEGDRVE PAEIQRLLVE TEGTPEERMI NQVLLRCMKQ ARYSHENLGH
FGLAARCYTH FTSPIRRYPD LVVHRILKAL LAGKITDKEI ARLETTLPET AEQTSRRERV
AMEAEREIVA LKKAQFMLQK IGEDFDGYIT GVTSFGLFVE LTEIFVEGMV HISTMGDDYY
RYVEKQHSLV GERTKETYRI GDKVRVTVAA VSIEKKQVEF VLAGLHERRP GASSPPGSEE
YPRIAVTGKR PRVLEERRRQ SKGDKKGSGK GKGPRGRRR