| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1375 |
|---|
| Symbol | |
|---|
| ID | 3740639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1536773 |
|---|
| End bp | 1537897 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637778657 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_384334 |
|---|
| Protein GI | 78222587 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0634631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.000428617 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTGG AAGAATCGAA GGAAAATCAA GGGGCGGGAG AAACCGCCAG AACCGCAACG
GATACGGCCG GCCCAGCGGG CAAGCAGCGG GGAGGGAAGC GGACGCGGGC AGGAATCATT
CTCCTCGCGG TGATCGCCAT CGGGCTGTTC ATGGGAACGC ACTGGTTCTT ACGGAGCAAG
ACCCTCATCA CCACCGACAA CGCCTTTGTT GAGGCCCACA TCCACGCGAT ATCGCCGCGG
GTTTCGGGCA CCGTGACCGC TGTCCCGGTG ATGGACAACC AGTTTGTGAA AAAGGGGGAG
ACCCTGGTGG AGCTGGACCC TACGGACTAT GAGGTTCGGG TCCGGTCGGC GGCCGCCGAC
CTTGACATGG CGCGCAATGA AACCTCGGGG GACTACGCCC AGGTGGAAGC GGCCCGGGCA
GCGGTTTCCC ACGCCCGGGC GCGGCTGGAC CAGGCGGAGC TGGACCTCAG GCGCGGAAGT
GTCCTCTTTA CCAAGGAGGT GATACCGCGT GAGCAGCTGG ATCGCCTCGA AACGGCACGA
CGGGTGACTG CTGCCCAGCT TCGGGAGGCA GAGGAAGGGG TACGCAAGGC CCAGGCAGAG
TTGGGTCTTG CCGGCACCGG CGGCAAAGAG GCCAGGGTGG CCCAGCGGGA GGCGAAACTA
CGGGAAGCCT CCCTCAGCCT CTCCTACACG CGCATCGTTG CCCCCGTCGA CGGCTACGTG
ACCCGCAAGT CCGTTGAGAC GGGATCCACG GTCCAGGCAG GGCAGCCCCT CATGGCCGTG
GTGGCCCTTA ACGACACGTG GGTGACGGCC AATTACAAGG AAAGCCAGCT TGCCCACATG
AAACCGGGCC AGAAGGTGAC GTTCACCGTG GACGCCTACC CCTCCCGCAC CTTTACCGGC
CGGGTCGACA GCATCATGGC CGGCACCGGC GCCGCCTTCT CGCTCCTCCC GTCCGAGAAC
GCCACCGGCA ACTACGTGAA GGTGGTGCAG CGAGTGCCGG TGAAGATCGT GGTGGATACG
GGGAGCGACC CCCGGCATCT GCTCCGGGTG GGAATGAGCG TGATCCCCAC CGTGAACACC
GGGCGCAAAC TGGGGGAAAT CCTCAGGGAT TTCCGGCCCT TCTAG
|
|---|
| Protein sequence | MAVEESKENQ GAGETARTAT DTAGPAGKQR GGKRTRAGII LLAVIAIGLF MGTHWFLRSK
TLITTDNAFV EAHIHAISPR VSGTVTAVPV MDNQFVKKGE TLVELDPTDY EVRVRSAAAD
LDMARNETSG DYAQVEAARA AVSHARARLD QAELDLRRGS VLFTKEVIPR EQLDRLETAR
RVTAAQLREA EEGVRKAQAE LGLAGTGGKE ARVAQREAKL REASLSLSYT RIVAPVDGYV
TRKSVETGST VQAGQPLMAV VALNDTWVTA NYKESQLAHM KPGQKVTFTV DAYPSRTFTG
RVDSIMAGTG AAFSLLPSEN ATGNYVKVVQ RVPVKIVVDT GSDPRHLLRV GMSVIPTVNT
GRKLGEILRD FRPF
|
|---|
| |