| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1293 |
|---|
| Symbol | |
|---|
| ID | 3739154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1453010 |
|---|
| End bp | 1454095 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637778573 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_384254 |
|---|
| Protein GI | 78222507 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.000110305 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00000426168 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGACCGC TGAAGATCGG CAAGCATGAG GCAAGGTATC CGCTCATCCA GGGAGGGATG
GGGGTTCGCA TCTCAGGGTG GAGGCTTGCG GGGCACGTGG CCAGGTGCGG CGGCGTGGGG
CTCGTGGCCA CTGCCGGCAT TACTCTCAAC AGCGGCCTCT ACACCGGTTC TAATTACCTC
CAGTCCAATC CAGAGGCGCT TCGACAGGAG CTGCGCAAGG CTTACGAAGT TGCTCCCGAC
GGGGTAATCG GCGTTAACAT CATGGTGGCG CTCGCCGATT ATGAAGAGCT CGTCCAGGCT
TCCATCGAGG GTGGCGCCAA GGTGATAGTC TGCGGAGCGG GTCTGCCCAT GACGCTTCCC
GGCCTTACCG CCCACGCCCC TGATGTGGCC ATCGTACCGA TCGTGTCCTC GCTTCGTGCT
GCCCAGCTCA TCGCCAAAAA GTGGGATAAA GGATACGGCC GTCTTCCCGA TGCGGTTGTT
GTGGAAGACC CCGACACCGC CGGCGGTCAC CTGGGTGAAA AGCTGGAAAA CATCGGTACC
GGTGACTATG ACCAGTACGG CACCATCCGG TCCATAAAGG AATTCTTCCG CTCCGAATAC
GGTAAAGAGA TACCGATTAT CGCCGCAGGG GGTATTTGGG ACCGTGCCGA CGTCCTCCAC
GCCATTGCCG AAGGGGCCGA CGGTGTTCAG ATGGCGAGCC GCTTCGTGCC GACGGTTGAG
TGCGATGCCG AAGACGCCTA CAAGCAGATG TACCTCGATT GCCGCAAGGA GGATATCGGC
CTCATCATGA GCCCGGCGGG GCTTCCGGGG CGAGCCATCC TCAGCAATCA GGAGAATATA
ACTCTTTATG ATGAGACAAA CGCAACTTCC TGCAGCAATG CTTGCCTGAA GAAATGCTCC
TACAAGGAAA GCGGCGAGCG GTTTTGCATC GTAAGTGCCC TCGACCGGGC CCAGCAGGGA
GATGTGGAGT CGGGGCTCGT CTTCTGCGGT ACCAACGCCT GGAAGGCCGA CCGCATCACC
ACCGTTCAGG AAATCTTCGA CGAGCTCTTC GCCGAGGAGG CCGGTCAGGC AGAAAAGGCC
GCATAA
|
|---|
| Protein sequence | MGPLKIGKHE ARYPLIQGGM GVRISGWRLA GHVARCGGVG LVATAGITLN SGLYTGSNYL
QSNPEALRQE LRKAYEVAPD GVIGVNIMVA LADYEELVQA SIEGGAKVIV CGAGLPMTLP
GLTAHAPDVA IVPIVSSLRA AQLIAKKWDK GYGRLPDAVV VEDPDTAGGH LGEKLENIGT
GDYDQYGTIR SIKEFFRSEY GKEIPIIAAG GIWDRADVLH AIAEGADGVQ MASRFVPTVE
CDAEDAYKQM YLDCRKEDIG LIMSPAGLPG RAILSNQENI TLYDETNATS CSNACLKKCS
YKESGERFCI VSALDRAQQG DVESGLVFCG TNAWKADRIT TVQEIFDELF AEEAGQAEKA
A
|
|---|
| |