| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1260 |
|---|
| Symbol | |
|---|
| ID | 3739759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1420132 |
|---|
| End bp | 1421832 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637778540 |
|---|
| Product | acetolactate synthase, large subunit |
|---|
| Protein accession | YP_384221 |
|---|
| Protein GI | 78222474 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00775476 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00000116322 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA CAGGTGCACG AATCCTCCTT GAATGTCTCA AGCGTGAAGG AGTTGATACT
GTTTTCGGTT ACCCCGGGGG CACGGTGATC AATCTCTACG ACGAGCTTTT CAGCTTCAAG
GATATCCGCC ATATTCTGCC CCGCCACGAA CAGGCAGGTG TCCATGCGGC TGATGGATTT
GCCCGTGCCA CCGGCAGGGT CGGTGTCGCC ATCGCCACCT CCGGCCCCGG TGCCACCAAT
ACGGTTACCG GTATCGCGAC CGCCTACATG GACTCCATCC CCCTTGTGGT GATAACCGGC
CAGGTGCCCA CGGCCCTCAT TGGCAATGAT GCCTTCCAGG AGGTGGACAT CATCGGCATT
ACCCGCCCCT GCACCAAGCA CAACTTTCTC GTGAAAGACG TGAAGGATAT CGCCACGATC
ATCAAGAAAG CCTTTTACAT TGCCCGCACC GGGCGTCCCG GGCCGGTTCT CGTGGACCTG
CCGAAGGATG TGCAGATCGC CACGGCCGAG TTTGAGTATC CCGAAGCCAT TGAGCTTCGC
AGCTACAAAC CGACCGTGGA GGGTCACCCG AAGCAGATCG AGAAGGCCGT GTCCATGCTC
CTGGCGGCTA AGAAGCCGGT CATGTACGTG GGAGGGGGCG CCATTTCCGG TGATGCCGCC
GGTGAACTCA CTGCCCTAGC CACCAGACTC CACATCCCGG TCACCACAAC CCTCATGGGA
CTCGGTTCCT TCCCCGAGGA CAATCCCCTC TCTCTCAAGC TTCTCGGGAT GCATGGCACC
TATTTCGCCA ATATGGCGGT GACCAACTGC GACCTGCTGG TTGCCGTGGG GGCGCGCTTC
GACGACCGGG TGACCGGAAA GATCGCCACC TTCGCTCCCC ATGCAAAGAT CATCCATATG
GACGTGGACC CGACATCCAT TCGGAAGAAC GTCCGGGTTG ACCTTCCGAT TGTTGGTCAG
GTCAAGGAAG TCCTTGGTCG CATGCTCAAG TCCCTTGATG AGAGCGGTGA CAAGGTAGCC
GCGTTCCATA CGGCGATCGA ACCGTGGCTT GCGGAAATCG AGGGGTGGAA GCAGAAGCAT
CCAATAACCT ACAAGCAGGC ATCCACGGTG ATCAAACCCC AGTTCGTGAT CCAGAAACTT
CGTGAGCTTT CTGATCCCGA CGCCATTGTG GCCACCGACG TGGGGCAGCA CCAGATGTGG
ACTGCCCAGT TCTTCGGGTT CCGTGAGCCC CGTACGCTCC TGTCGTCCGG CGGGCTCGGA
ACCATGGGAT TCGGATTGCC AGCGGCCATG GGGGCCCAGG CAGCCTTCCC GAACCGGCAG
GTCATCGCGG TTTGCGGCGA CGGCGGTTTC CAGATGAACC TCCAGGAGGT GGCAACGCTG
GTCCAGAATC GGCTTCCCGT GAAGATCGTC ATACTCAACA ATAACTTCCT CGGCATGGTG
CGCCAGTGGC AGGAACTCTT CTTCGATAAG CGCTATTCAC AGACCTGCAT GGAGCTTCCC
ATTGATTTCA TCAAGCTTGC CGAGGCGTTC GGGGCTAAGG GGTTCCAGGC GACAAAATCC
GACGAGGTGG AAGCTACCAT CAAGAAGGCC TTCGAGACGC CAGGACCGGT TATCATGGAA
TTCAAGATCG CCCGGGAGGA GAAGGTTCTC CCCATGGTTC CTGCCGGGGC GTCGCTCAAT
GAAATGGTGC TCAATGCCTG A
|
|---|
| Protein sequence | MKMTGARILL ECLKREGVDT VFGYPGGTVI NLYDELFSFK DIRHILPRHE QAGVHAADGF
ARATGRVGVA IATSGPGATN TVTGIATAYM DSIPLVVITG QVPTALIGND AFQEVDIIGI
TRPCTKHNFL VKDVKDIATI IKKAFYIART GRPGPVLVDL PKDVQIATAE FEYPEAIELR
SYKPTVEGHP KQIEKAVSML LAAKKPVMYV GGGAISGDAA GELTALATRL HIPVTTTLMG
LGSFPEDNPL SLKLLGMHGT YFANMAVTNC DLLVAVGARF DDRVTGKIAT FAPHAKIIHM
DVDPTSIRKN VRVDLPIVGQ VKEVLGRMLK SLDESGDKVA AFHTAIEPWL AEIEGWKQKH
PITYKQASTV IKPQFVIQKL RELSDPDAIV ATDVGQHQMW TAQFFGFREP RTLLSSGGLG
TMGFGLPAAM GAQAAFPNRQ VIAVCGDGGF QMNLQEVATL VQNRLPVKIV ILNNNFLGMV
RQWQELFFDK RYSQTCMELP IDFIKLAEAF GAKGFQATKS DEVEATIKKA FETPGPVIME
FKIAREEKVL PMVPAGASLN EMVLNA
|
|---|
| |