Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_1259 |
Symbol | |
ID | 3739758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 1418400 |
End bp | 1420061 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637778539 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_384220 |
Protein GI | 78222473 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000000947046 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0000123711 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGCAGTG ACACCATAAA GCAGGGGATC GAACGGACTC CGCACCGAGC CCTCATCAAG GGAACCGGGG TTCCCCAAAG CGAAATGGCA AAACCCTTCA TCGGCGTTGC CACCAGCTTC ACTGACCTTA TCCCTGGTCA CGTAGGAATG CGTGACCTGG AGCGATTTAT TGAGAAGGGA ATCCACAGCG GCGGCGGTTA CGCCTTTTTC TTCGGCATTC CCGGTGTCTG TGACGGAATC GCCATGGGGC ACAAGGGGAT GCACTACTCT CTCCCGACCC GCGAACTGAT TGCCGATATG GTTGAGTCGG TGGCCGAAGC CCATCGCCTC GATGGCCTCG TGCTGCTCAC CAACTGCGAT AAGATCACCC CTGGTATGCT TATGGCGGCT GCTCGGCTTG ATATCCCCAC CATCGTGGTA ACCGCCGGCC CCATGATGGC CGGCCGCGGT GTTGAAGGGC GCCGCTTTTC CTTCGTGACC GATACTTTTG AGGCCATGGC ACGCTACAAG GCCGGTGTCA TCGATGCGAA GGAGCTTCAG GTCTGCGAGG ACAACGCCTG TCCCGGTATG GGGTCGTGCC AGGGGCTCTT TACCGCCAAT ACCATGGCTA TTCTCACCGA AACCCTCGGC ATGAGTCTCC CTCGTTGTGG GACGGCCCTG GCGGTTTCCG CCCTCAAGCG TCGCATAGCA TTCGCCTCGG GTGAGAAGAT CGTGGACCTG GTCCGCAATG GGGTTACCCC GCGCCAGATC CTGACACGTG CTGCATTTGA AAACGCCATC CGGGTGGATC TCGCCCTCGG CGGTTCCTCT AATACGGTCC TCCACCTCCT GGCCATTGCC CGGGAGGCAG GGGTTGATCT CCCTCTCGAA ACCTTCGATA TCCTTTCCAA GGAGACGCCG CAGATTGCCT CCATGAATCC CGCTGGAGAG TATTTCATGG AGGATCTCGA CGCGGCCGGC GGTGTTGTCG GGGTGTTGAA ACAACTCGGT GGCACCATTA AGGACAGCCC GACCGTCTTG GGGCTTACCA CCCGCGAGTT GGCCTCCACG GTGGAATCGG TGGATGAGCG GGTGATCCGT CCCGTTTCCG ACCCGGTCAA GAAAGAAGGG GGAATCGCTG TCCTCTTCGG TAATCTCGCA CCCAAAGGTG CCGTGGTGAA GCAGTCGGGG GTGTCTGCTC CCATGATGCA GTTCGAGGGG ACTGCCCGCT GTTTCGACTC GGAGGAACTC GCCATGGCCG CCCTCATGGG GGGGAAGATC ACGTCTGGCG ACGTGGTGGT CATTCGTTAC GAAGGGCCCA AGGGTGGTCC GGGGATGCGG GAGATGCTCG CACCGACCGC AACCCTCATG GGACTCGGCC TCGGCGATTC CGTTGCCCTT GTTACCGACG GCCGTTTTTC CGGCGGCACC CGTGGCCCCT GTATCGGCCA CATATCCCCG GAGGCGGCAG AAGGGGGCCC CATCGCCCTG GTTGAAGAGG GGGACAGGAT CCGTCTCGAT ATTCCCAACC GGAAGCTGGA GCTCCTTGTG GATGAGTCGA TCCTCGCGGA ACGCCGCAGC CGCTGGGTAG CCCCTGAGCC CAAGATCAAG ACCGGATGGC TTGCCCGCTA TGCCAAGGTG GTTACTTCGG CATACACCGG CGCGGTTACC ACAGCCGAAT AG
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Protein sequence | MRSDTIKQGI ERTPHRALIK GTGVPQSEMA KPFIGVATSF TDLIPGHVGM RDLERFIEKG IHSGGGYAFF FGIPGVCDGI AMGHKGMHYS LPTRELIADM VESVAEAHRL DGLVLLTNCD KITPGMLMAA ARLDIPTIVV TAGPMMAGRG VEGRRFSFVT DTFEAMARYK AGVIDAKELQ VCEDNACPGM GSCQGLFTAN TMAILTETLG MSLPRCGTAL AVSALKRRIA FASGEKIVDL VRNGVTPRQI LTRAAFENAI RVDLALGGSS NTVLHLLAIA REAGVDLPLE TFDILSKETP QIASMNPAGE YFMEDLDAAG GVVGVLKQLG GTIKDSPTVL GLTTRELAST VESVDERVIR PVSDPVKKEG GIAVLFGNLA PKGAVVKQSG VSAPMMQFEG TARCFDSEEL AMAALMGGKI TSGDVVVIRY EGPKGGPGMR EMLAPTATLM GLGLGDSVAL VTDGRFSGGT RGPCIGHISP EAAEGGPIAL VEEGDRIRLD IPNRKLELLV DESILAERRS RWVAPEPKIK TGWLARYAKV VTSAYTGAVT TAE
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