| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1249 |
|---|
| Symbol | |
|---|
| ID | 3738792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1409319 |
|---|
| End bp | 1410575 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637778529 |
|---|
| Product | permease YjgP/YjgQ |
|---|
| Protein accession | YP_384210 |
|---|
| Protein GI | 78222463 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000000103776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.00076385 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAC AATTGACAAG GGCAAACTGT GATGCACACC CCTCTGTTAT TTACAACCCT
CATACCTTCG TGTATCATCG CGCCTCCATG ACCAGCATTC TGTTCCGTTA CATTTTCAAG
GAAACCGCTG TTCCGTTCGT TCTCGGCATG GCGGTTTTTA CCTTTGTACT TCTCATGGGG
CGCCTGCTCA AACTGGCAGA GATGGTCTTC GCCAAGGGAG TGCCATTCCT CGACGTTTGC
CGACTCATCC TCTACATGCT TCCTTCCTTC TTGCTCGTTG CAATCCCCAT GGCATTTCTG
CTGGCGGTAC TTCTTTCCTT CGGCAGACTG TCCGCGGACA GCGAAGTAAC AGCCATGAAG
GCGGGGGGGG TTGGCCTCGG ATCGCTGCTC ACGCCAGTCT TCACGTTCGC CGTCCTTGCC
TATCTCGTCA CGACGTTCAT CACGGTCTTT GCACTCCCCT GGGGCAACAC TTCCTTCAAG
CGATTTCTCT ACGAGGTTAT TGAGTCGCGG GCTGCCACAA CCATCAAGGA AAAGGTATTT
ATCGACGATT TCCCCGGCTT GGTTGTGTAT ATTGACGATT ATGACCAGAC GAGCCACCAG
ATATCGGGCA TCCTGATCCA TGACGAGCGC AACCCGGATG AACCAATGAC CATCTTCGCC
TCAACCGGAA TAATCGCGGC AGCTCCCGAA GAAAAAAACG TCCGACTTCA CCTTGTGAAC
GGGAGCATTC ATCGGGGGAT AGATCCTGGC GGCTACCGTC TTGTTGAGTT CCGCAGCTAC
GACCTCCATG TGGACCTGCG CCAGAACGCG AAAAAAAACC AGTTCGACGA ACAGGATATG
ACCCTCAAGC AACTTATTGC CAGTCGCGGG AACCGACAGA ACAACGAAAA GTTCCGCCGC
GATGTCTCGA TTGAGCTTCA TAAACGGTTT GCGCTCCCCT TTGCCTGCAT CGTATTCGCA
ATGGTAGGCG TTCCGCTTGG CATCCAGAAC CAGCGGTCGG GAAGAGCAGG AGGTTTTTCA
GCGGGCATCA TCATCCTCAT GCTGTACTAC GTGGTCATGT CCGCCGGCAA GACCATTGCG
GAGAAGGAAA TTCTTCCCAT CCCGCTTGCT GTCTGGCTCC CCAATGTCTT CTTTACCGCC
TTTGGCGTTT ATCTGCTGAG GCTCGCGGCG ACTGAACGGC CCTTTCCTCT GATAGAGAGA
GGGCGAACGC TTATCGGAGA GGCGCGGGAG TGGCTCCACC GGAGGAAGGC TGCGTGA
|
|---|
| Protein sequence | MNRQLTRANC DAHPSVIYNP HTFVYHRASM TSILFRYIFK ETAVPFVLGM AVFTFVLLMG
RLLKLAEMVF AKGVPFLDVC RLILYMLPSF LLVAIPMAFL LAVLLSFGRL SADSEVTAMK
AGGVGLGSLL TPVFTFAVLA YLVTTFITVF ALPWGNTSFK RFLYEVIESR AATTIKEKVF
IDDFPGLVVY IDDYDQTSHQ ISGILIHDER NPDEPMTIFA STGIIAAAPE EKNVRLHLVN
GSIHRGIDPG GYRLVEFRSY DLHVDLRQNA KKNQFDEQDM TLKQLIASRG NRQNNEKFRR
DVSIELHKRF ALPFACIVFA MVGVPLGIQN QRSGRAGGFS AGIIILMLYY VVMSAGKTIA
EKEILPIPLA VWLPNVFFTA FGVYLLRLAA TERPFPLIER GRTLIGEARE WLHRRKAA
|
|---|
| |