| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1243 |
|---|
| Symbol | |
|---|
| ID | 3738786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1400215 |
|---|
| End bp | 1402179 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637778523 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_384204 |
|---|
| Protein GI | 78222457 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.0706231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTT TCGACGAGCT GAAAAACCGT CGTGACAGCG TGGGACTGAG GTTCTTCCTC
CTGTTCACAC TCTTTATCGC GGTAATTTCG ATTTCGTTTA CGGTTTTCTT CTTCCAGCAA
CAGCGAAGCG CCCTGAGGGA TAGTCTGGTC AACGAGGGGA AACTCCTGGC GAGACTCCTG
GCCCACAATA CCCGTCTCGG TGTTTTTGCC GAAAATGCAG AACTTCTGCG GGACCCCATC
CAGGGTATTC TGGAACACGA AGGAGTCCTT TTTGTCACCA TCGTGACGGC AGAAGGTAAA
GCACTCCAGG AACAGGCACA CAAGAGTGTT ATCAACAATT CCGGCCGGGC CTTTCCCCAT
TGGAGCACCC GCTTCGAACG GCTGAAAGGG ACAACCGAGC CCTCGGTCTT CGAGGGAGAT
GACATCTTCG AGTTCTGGGC ACCAGTACTG TCGAGTTCAT CCTTCCCCAC GGACGGATCA
TTGTTCCTCG ACCAACCCCC ACGGCCAACG CCCCGCGTTA TCGGTTATGC GCGAATCATC
GTCGACAAGA GCCTTCTCGG GAAAAAACTC GACACGCTCC TCTACACAAG CGTCCTCATG
GCAGCGGGCT TTCTCCTCCT CGGCACCTTC TTCACCTACG TCATAACCCG TAGAATTACG
CGCCCCCTCG ACCGACTCAC CGAAGGGATC AGGGTTCTCG AAAGTTCTGG TTCATTCGAG
CCTGTCCCCG TGGAATCGAA GGATGAGATC GGCCGGCTCG CCACGGCGTT CAACCACCTG
GGCACTACAC TGAAAACCCG TGAGGCCGAG AAGGAACTCC TGGCCGAGGA ACTCCGCCAT
GCCCAGAAGA TGGAGGCTAT CGGAACACTT GCCGGGGGGG TAGCCCACGA TTTCAACAAC
ATACTCACTG CCATCGTTGG CTTCGGAACG CTTCTGCAGC GCAGCCTCAA GACTGACAAC
CCCTATCGCA TTTACGTGGA ACAGATTCTC TCAGCCGCTG ACCGGGCCAC CAACCTCGTC
AAACGGCTCC TCGCCTTCGG CAGGAAGCAG GTAATCTCTC CTCACCCGAC GAATCTGAAT
GACATTGTGA AGGGTATAGA GAAACTTCTC CATCGACTGG TGAGCGAGGA TATCACCTTT
GTAACCTCGC TCTCCAGCGA ACCCCTCGTG TGCCATGTGG ATGCGGGGCA AATCGACCAG
ATCCTGATGA ATCTCGTGAC AAACGCCCGC GACGCCATGC CGGACGGCGG CACGCTTACT
GTTACGACGG GGAGCGACTT CCTGGAAGAA GATTTCTTCG GTCCCCTTGA AAAGGGAAAA
ACCGGCTACT ACGCAATTCT GACCATTGCA GATTCGGGCA CCGGCATGGA CTGCGAAACA
CAGGAACGCA TCTTCGACCC CTTCTTCACC ACCAAGGAGG TCGGCAAGGG AACAGGGCTC
GGCCTCTCCA TGGTCTACGG CATCGTCAAG CAGCACGAGG GATTCATCAC CGTTGATTCA
GAGATAGGGA AAGGAACTGC CGTCAGAATT TACCTTCCCA TCGTGGCGCC AAAGGAGACC
ACGGAGCACC GCGACGCAAC GGCGGCCGCC CAGGGGAACC AGGAGACCAT CCTGATAGCC
GAAGACGACC GGGACGTGCG CAAGCTCTCG AAGCTCGTTC TTGAACGCAA CGGCTACACC
GTCATCGAAG CGAGCGACGG TGCCGAGGCT GTCCGGCGGT TCATGGAGAA CAGCACCCGG
ATAGACCTTC TGCTTCTCGA TGTGGTTATG CCCAAAAGGA ACGGCCAGTC CGTCTATGAA
GAGATCCGGA ACATCCGGCC GGAGATGAAG GCGCTCTTCA TCAGCGGCTA CACCCAGGAC
ATCATCAGCC GGAAAGGGGT CCTCGACGAG GGGATCAACT TCATAGCGAA ACCGGTGAAA
CCGGACGAAC TCCTGGCAAA GATCAAAGAG GTATTACAGA ACTGA
|
|---|
| Protein sequence | MDFFDELKNR RDSVGLRFFL LFTLFIAVIS ISFTVFFFQQ QRSALRDSLV NEGKLLARLL
AHNTRLGVFA ENAELLRDPI QGILEHEGVL FVTIVTAEGK ALQEQAHKSV INNSGRAFPH
WSTRFERLKG TTEPSVFEGD DIFEFWAPVL SSSSFPTDGS LFLDQPPRPT PRVIGYARII
VDKSLLGKKL DTLLYTSVLM AAGFLLLGTF FTYVITRRIT RPLDRLTEGI RVLESSGSFE
PVPVESKDEI GRLATAFNHL GTTLKTREAE KELLAEELRH AQKMEAIGTL AGGVAHDFNN
ILTAIVGFGT LLQRSLKTDN PYRIYVEQIL SAADRATNLV KRLLAFGRKQ VISPHPTNLN
DIVKGIEKLL HRLVSEDITF VTSLSSEPLV CHVDAGQIDQ ILMNLVTNAR DAMPDGGTLT
VTTGSDFLEE DFFGPLEKGK TGYYAILTIA DSGTGMDCET QERIFDPFFT TKEVGKGTGL
GLSMVYGIVK QHEGFITVDS EIGKGTAVRI YLPIVAPKET TEHRDATAAA QGNQETILIA
EDDRDVRKLS KLVLERNGYT VIEASDGAEA VRRFMENSTR IDLLLLDVVM PKRNGQSVYE
EIRNIRPEMK ALFISGYTQD IISRKGVLDE GINFIAKPVK PDELLAKIKE VLQN
|
|---|
| |