| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1218 |
|---|
| Symbol | |
|---|
| ID | 3738758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1372309 |
|---|
| End bp | 1375110 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 933 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637778498 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_384180 |
|---|
| Protein GI | 78222433 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.493639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0000319453 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGGG GGGAGCCGTT GAAGGGGGAA GGCAAAAAGT TACGGATAGG TGAAGATACC
CGGTCGACGG GCCGGAACAA ACAGCACAGC AGCAGGGTAA AGGGGAGCGA AGAGGAAATT
TCCTTTCTTG CCGATTTGCT TGAAGGCTCC GATCAGCCCT TTGGTATCGG TTACCCGGAC
GGAAGAATCG GCCACGTGAA CGGCGCTTTC GAGCGGCTTA CCGGCTACAG CAGGGAAGAA
TTGCGGGCCA TGAACTGGAA CAGCTCTCTC ACCCCGCCCG AATGGCTGGA CAGGGAACGG
GCGATACGGG AGGAGATTTG CCGCACTGGC GAGTCCGTTA GGTATGAGAA GGAATATATC
CGGAAAGATG GCGCTCGGAT TCCGGTCGAA CTTCTCGTCC ATGTCAAAAA GGATGAAGCA
GGCAGCCCCC TCTATTACTA CTCCTTCATA ACCGATATAA CCGAGCGCAA GAGGCTCGAT
AATCAAATAC AACGTCTTTC CTATTTCCCA CAGTTCAACC CGAATCCGAT AGTCGAGACC
GATTACGCCG GCAGGGTAAC TGTCTGTAAT CCGGCCACGC ACAAGGTTCT TGAGAGCATC
GGCGCGGGGG CCGATCCCGG CCTGTTTGTC CCCGCGGATC TGGGCACTAT TCTCCATGAG
TGGGACGGAA AAAGCGAAGC AAGCACTATC TGCGAGCTTT CCATCGGCAC GAGGGTCTTC
CGCGAGACCA TTTTTTTTAC TCCCCAGTTT CCTGTCGTGC GCATCTATGT CCACGATATC
ACCGATATCA GAAATGCCGA GAAGTCGCTG CGAGAAAACG AGGAACGGCT CCGGCTCTTC
ATCGAGCACG CTCCCGCAGG ACTCGCGATG TTTGATCGCG ATATGCGTTA CCTGAACGTC
AGCCGGCGCT GGCTGACCGA CTACAGGCTC GGCGACCGTG ATCTGCGCGG ATTAAGCCAC
TACGAGGTTT TCCCGGAGAT TCCCGAAGAG TGGAAGGAAG CCCAACGCCG CGGGCTGGCC
GGGGAGGAAC TACGGGCGGA AGGAGACCGT TTCATGCGGG CCGACGGCTC GCTGCAGTGG
ATACGGTGGG AGATTCATCC CTGGCACGAT TCGTCGGATC AAGTGGCTGG AATTGTTATT
TTCTCCGAAG ACATCACCGA GAGTAAGAAG GCAGAGGAAA AGATTTTACT GTTAAACCAG
CAATTGGAAC AGCGGGCAGC CGAGTCGCAG CTTATCCTCG ACACCTCGCC CATCGGCCTG
GCTATTGCCA ACGATCCCCA AGGCGTCATG ATTCGGGGGA ATCCGGCCCT GGAAAAGTTG
CTTGGAGTAA CGGCCGGCAG CGAACTTTCC AAAAATGCGT TCAACTCGGC AGGTTATCGG
GTTTTCAAGA ATGGGGAGGC GATTGCTCCA TCGCAATTGC CCATGCAACG GGCTGCCCGC
GGTGAACCCG TTTCCGGAGA AACCCTCGAC ATCGTACGGG AGGATGGGAC CGGTCTGAAT
CTGTACTGTT CCGCAGCAAC GCTGCGGGAT AATGAAGGAA AGCCATGCGG GGCCGTCGGT
GCCTTTATGG ATATAACCGA ACGCAAGGAG TTGGAGGATG TTGTCATCAA GAGCCAGCTC
GACACCTATG CCATCCTTGA CAACATCCCC TTTAATGCCT GGCTCAAGGA CACGGAAGGT
CGCTATGTGA AGGTGAATTG GCAGTTCGCT ACATTCTGCG GCTACACATC GCCGAAAGAG
GTTGTCGGGA AAACGGACAT GGACCTCTGG CCTATGCACA TGGCCGAGGC ATATTGCGCC
GACGATCAGG ACGTCATGAG GAGCGGCCAG AGAAAATTAA TCGAAGAACA GGTTGTTGAG
CATGGAGAGG AGAGGTGGTT TGAAACGTTC AAGGCACCCC GGTTTGACCA GAACGGCACG
GTCATCGGCA CGACCGGTAT TGCCAAAGAC ATCACCGAAG CCAAGAGGGC CGTGGAAGCT
TTGCAGTCTA TCCGCAACGA ACTGGAGCAG AAGGTTGCGG AGCGAACCTG GGAGCTTGCT
ACCGCGCTCA ATGACTTGCG AAAAGAGAGC TCTGACCGTA TCCAGGCTCT GGAGGCGCTC
CGCGAACAGG AGCGGCTTCT CATCCATCAG GGGCGTCTCG CGGCCATGGG GGAGATGATC
GGCAATATCG CGCATCAGTG GCGGCAGCCG TTGAATACGC TGGGGCTCAT CATTCAGGGG
CTCTCCATGA GTGAAGAGTT GGGCGAGCTC ACGAAAGACC ACCTTGATGA AAGAGTTAAC
CGGGCCATGC AGCTGATTTA TCACATGTCC CAGACCATCG ACGACTTCAG GAATTTCTTC
AGGCCCGACA AGGAAAAAGT CCGGTTTGAA ATGAAGCAGG CGATCAATAA CGCTCTTTCC
CTTATGGGAG ATAACTTCAG GAGTCTCGGG ATAGAGGTTT CGTGCGACTC CCCACAGGAC
ATGTCTATCG CCGGATATCC CAATGAATTT TCCCAAGCAC TCCTCAATAT TCTCATGAAT
GCCCGGGATG TCCTCCAGGA GCGGAAAGTG GAGGCCCCGC GTGTCTTGGT GCGTCTGTTC
GCGGAAGATA ACCGCGCTGT GGTCACCATT GCGGACAATG GTGGTGGTAT TGATAGGGAG
ATCATTGGAA AGGTATTCGA TCCGTACTTC ACCTCAAAGG GCCCGAGCAG CGGTACAGGG
CTCGGGCTCT TCATCGCGAA GACCATTATC GAAAAGAACA TGGGTGGTAC GCTCACCGTG
CGCAATAGCG GCGAAGGAGC GGAATTCAGG ATAGAGGTCT GA
|
|---|
| Protein sequence | MKRGEPLKGE GKKLRIGEDT RSTGRNKQHS SRVKGSEEEI SFLADLLEGS DQPFGIGYPD
GRIGHVNGAF ERLTGYSREE LRAMNWNSSL TPPEWLDRER AIREEICRTG ESVRYEKEYI
RKDGARIPVE LLVHVKKDEA GSPLYYYSFI TDITERKRLD NQIQRLSYFP QFNPNPIVET
DYAGRVTVCN PATHKVLESI GAGADPGLFV PADLGTILHE WDGKSEASTI CELSIGTRVF
RETIFFTPQF PVVRIYVHDI TDIRNAEKSL RENEERLRLF IEHAPAGLAM FDRDMRYLNV
SRRWLTDYRL GDRDLRGLSH YEVFPEIPEE WKEAQRRGLA GEELRAEGDR FMRADGSLQW
IRWEIHPWHD SSDQVAGIVI FSEDITESKK AEEKILLLNQ QLEQRAAESQ LILDTSPIGL
AIANDPQGVM IRGNPALEKL LGVTAGSELS KNAFNSAGYR VFKNGEAIAP SQLPMQRAAR
GEPVSGETLD IVREDGTGLN LYCSAATLRD NEGKPCGAVG AFMDITERKE LEDVVIKSQL
DTYAILDNIP FNAWLKDTEG RYVKVNWQFA TFCGYTSPKE VVGKTDMDLW PMHMAEAYCA
DDQDVMRSGQ RKLIEEQVVE HGEERWFETF KAPRFDQNGT VIGTTGIAKD ITEAKRAVEA
LQSIRNELEQ KVAERTWELA TALNDLRKES SDRIQALEAL REQERLLIHQ GRLAAMGEMI
GNIAHQWRQP LNTLGLIIQG LSMSEELGEL TKDHLDERVN RAMQLIYHMS QTIDDFRNFF
RPDKEKVRFE MKQAINNALS LMGDNFRSLG IEVSCDSPQD MSIAGYPNEF SQALLNILMN
ARDVLQERKV EAPRVLVRLF AEDNRAVVTI ADNGGGIDRE IIGKVFDPYF TSKGPSSGTG
LGLFIAKTII EKNMGGTLTV RNSGEGAEFR IEV
|
|---|
| |