| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1151 |
|---|
| Symbol | |
|---|
| ID | 3741358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1277585 |
|---|
| End bp | 1278307 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637778427 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_384114 |
|---|
| Protein GI | 78222367 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.000385696 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.159732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCCGA TAAAGGACTA TAATCCGACG CGACGCTTTC CCTTGGTGAG CGTCGCTTTT
ATCGTTCTGA ATGTCATCGT TTTCATCCTT GACCGCATTT CCGGTCATTA CGAGCCTCTG
ATCATTGAAA CCTCACGGGG GCTGATCAGG ACGAGGCAGT TTGTCGGCGG GCTCTCCGCC
GACTTTGCCC TCGTTCCGGC GGCCCTCACC TCCCACCCCC TCCTTGCCTG GCCCACCGTG
TTCAGCTCCA TGTTCCTCCA CGGCAACTGG CTTCACATCG GCTCAAATAT GCTTTACCTC
TGGATCTTCG GCAACAATGT TGAAGACGTT CTGGGACGTG GACGGTTTAT CCTCTTTTAT
TTCACCTGCG GAGCGGTAGC TGCCCTGGCA CAGGTCATGA GCGCGCCTGG CTCGGATATT
CCGATGGTGG GGGCGAGCGG CGCCGTGGCA GGGGTCATGG GGGCCTATCT TCTCCTCTTT
CCCAAGGCGC GGATTCTGAC CCTGGTGCCG ATCCTGTTCT TTTTTACGTT CCTGGAAGTG
CCGGCGTTCA TCATTATCGG TTACTGGGTG CTTATCCAGT TTCTGAATGC CACCTGGCTG
GGGGGAGGGG AGTTGCTGCG GGGAGGGGTC GCCTATTTTG CCCACATCGG CGGGTTCGTG
GCCGGCGTGA CCTTTGTCTT GCTTGCGAGG ATGGGAAGGC GCGGTGGCTA TGGCCGTCTT
TAG
|
|---|
| Protein sequence | MIPIKDYNPT RRFPLVSVAF IVLNVIVFIL DRISGHYEPL IIETSRGLIR TRQFVGGLSA
DFALVPAALT SHPLLAWPTV FSSMFLHGNW LHIGSNMLYL WIFGNNVEDV LGRGRFILFY
FTCGAVAALA QVMSAPGSDI PMVGASGAVA GVMGAYLLLF PKARILTLVP ILFFFTFLEV
PAFIIIGYWV LIQFLNATWL GGGELLRGGV AYFAHIGGFV AGVTFVLLAR MGRRGGYGRL
|
|---|
| |