| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1109 |
|---|
| Symbol | |
|---|
| ID | 3738602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1231882 |
|---|
| End bp | 1232499 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637778387 |
|---|
| Product | bidirectional hydrogenase complex protein HoxE |
|---|
| Protein accession | YP_384074 |
|---|
| Protein GI | 78222327 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.130681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA CCAGCCGCTT TACCCTCCAA TCATCGGAAA TCACCCCCGA GAGCATCTCT
CAGACCCCCT CTACTCCTAC AGAATTGACA TCCGATCCCC GTTTCCAGGC GGTGGAACGG
ACCATCAAGC AGTTCCAGTG CCGGGCCGAC GCCCTCATTG AGGTGCTCCA CGTGGCCCAG
GAGGCCTTCG GCTACCTGAG CGACGAGCTC ATGGCCCACG TGGCGAGGCA GTTGAAAATC
CCCTTCAGCC AGGTCTACGG GGTCGCCACC TTCTACCACT TCTTTTCCCT TGAACCCCGC
GGCGCCCATA CCTGCGTCGT CTGCACCGGC ACGGCCTGCT ATGTGAAGCG ATCCGCCGAG
ATCCTTGTGC GCCTTGAGCA GGAGTTCAGG GTCAAGGCCG GCAAGACCAC CGAAGACGGT
GGCCTCACGC TCTCCACAAT CCGGTGCCTT GGTAGTTGCG GCCAGGCGCC AGTCATGGTT
CTTGACGGGG AGACGGTGGG ACAATGCACC CCCGATTCGG CCGTTGTCGC GGTAAAGGCG
CTTCAGGAGA GCGGCCGGCC CCGGCCGAAC GATGAGGGAG GGGTGCGGCA GGAGGGGGGA
GGGGGGAGAA CCCCATGA
|
|---|
| Protein sequence | MGRTSRFTLQ SSEITPESIS QTPSTPTELT SDPRFQAVER TIKQFQCRAD ALIEVLHVAQ
EAFGYLSDEL MAHVARQLKI PFSQVYGVAT FYHFFSLEPR GAHTCVVCTG TACYVKRSAE
ILVRLEQEFR VKAGKTTEDG GLTLSTIRCL GSCGQAPVMV LDGETVGQCT PDSAVVAVKA
LQESGRPRPN DEGGVRQEGG GGRTP
|
|---|
| |