| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1059 |
|---|
| Symbol | |
|---|
| ID | 3739506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1177284 |
|---|
| End bp | 1180316 |
|---|
| Gene Length | 3033 bp |
|---|
| Protein Length | 1010 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637778337 |
|---|
| Product | formate dehydrogenase alpha subunit |
|---|
| Protein accession | YP_384024 |
|---|
| Protein GI | 78222277 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.080154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATTT CACGCAGGCA GTTTCTGCAG CGGGGGGCAC TGGCCGGCGC GGCCATCGCG
CTCTCCGGCA AGCCGGGGGA GGCGAGCGTC GATGCTCCCG AGCTCCGGAC CAAGGGGCTG
AAGACCACGA CCACCATCTG TCCGTTCTGC TCGGTTGGGT GCGGCCTGAT CGTCCACACC
AAGGACGGCA GGGTGGTGAA CGCCGAAGGT GACCCGCAGC ACCCGATCAA CCAGGGGGCG
CTCTGTCCCA AGGGGGGCGC GCTCTTCCAG ATCGCCAACA ACGAGAACCG GCTCCAGAAG
GTGAAGTACC GGGCGCCCGG CTCCGACACA TGGGAAGAGA AGAGCTGGGA CTGGGCCCTT
GACCGGATCG CCCAGCGGAT GAAGGAAACC CGCGACAAGT CCTTCAAGAA GACTGAGCTC
AACAAGAAGG ACAACAAAGA GTACGTGGTG AACCGCACCG ATGGCATGGC CTTCTTCGGC
GGCGCCGGTC TTGATAACGA AGAGTGCTAC CTCTGGACCA AATTCGCCCG CGCCATGGGG
GTGGGGCAGC TCGAACACCA GGCCCGACTT TGACACTCGT CAACGGTCGC CGGTCTGGCG
GCTTCATTCG GTCGTGGTGC CATGACCAAC CATTGGATTG ACCTGAAGAA CTCCGACGTA
ATCCTGGCCA TCGGCTGCAA CCCGGCCGAG AACCACCCTG TTTCGTTCAA GTGGATCGAG
CAGGCGCTCG ACAGCGGCGC CAAGCTCATT GCCGTCGATC CGCGCTATAC ACGCACGGCC
TCCAAGTCGG ACATCTACGC CCAGATCCGT CCGGGGACCG ACATCGCCTT CCTGGGGGGG
ATAATCAACT TCGCCCTCCA GAACAACATG ATCCACGAGG AGTACGTCCG CGAGTACACC
AACGCCACGT TCATCGTCTC GGAGCAGTTC GACTTCCAGG ACGGCATGTT CTGCGCCTTC
GACGATCAGG AGAAGACCTA CGACCTCAAG TCCTGGGCCT ACGCCACCAC CGCCGACGGC
AAGCCCAAGC GGGACATGGG CATGAAGGAT CCCAAGTCCG TCTACCAACT CCTGAAGAAC
CACTACCGGC GCTATGATGT GGACACCGTC TGCGCCATCA CCGGCACGAA AAAGGAAGAC
TACCTCAAGG TGGCCAAGGC GTTCTGCGGC ACCGGTCGCG CCGACAAGGC GGGGACCATC
CTCTACGCCA TGGGGATCAC CCAGTCGACC CACGGCAGCC AGAACGTCCG GGCCGTGGCG
CTCCTCCAGA TGCTGCTGGG GAACATCGGC ATCGCCGGCG GCGGCGTGAA CGCCTTGCGG
GGCGAGTCCA ACGTCCAGGG CTCCACCGAC TACGGGCTCC TCTTCCACAT CCTCCCCGGC
TACCTCAAGT CGCCGGAGTT CGACAACGTG GACCTGAAGG CCTACAACGA GAAGTGGACC
CCCAAGACCA AGGACCCCAA GAGCGCCAAC TGGTGGGGGA ACACCCCCAA GTACATCACG
AGCCTCCTCA AGGCCTGGTA CGGCGAGAAC GCCACGGCCG AGAACGACTT CTGCTACGAC
TACCTCCCCA AGCGGTCGGG GAACTACTCC TACGTGAAGA TCATGGAGAA GATGGGGAAG
GGAGAACTGG AAGGGCTCGT CTGCATGGGG ATGAACCCGG CCGTGGGGGG CCCCGATTCC
GGCAAGGCCC GGGAGGCCCT TGGCAAGCTC AAGTGGCTCG TCACCGCCGA CCTCTGGGAG
ACCGAGAGCT CCATCTTCTG GAAGCGTCCC GGCGTCGACC CGAAGTCGAT CCAGACCGAG
GTCTTCATGT TGCCGGCCGC CTCCTCCATC GAGAAGGAAG GCTCCATCTC CAACTCGGGC
CGCTGGGCCC AGTGGCGCTA CGCCGCCGTC CACCCGCTGG GTGATTCCCG CAGCGACCTC
CACATCATCG ACGAGTTCTA CAAGCGGGTG AAGGCCCTCT ACCTGAAGCA GGGGGGCGCG
TTCCCCGAGC CGATCACCAA GCTCTCCTGG AGCTACGGCA CCGGCCACGA GCCCGACGTC
CATATGGTGG CCAGGGAGAT CAACGGCTAC TTCACCAAGG ACATGACCAT CGTCGACAAG
GACAAGACCC TGGAGTTCAA GAAGGGGGAT CAGGTCCCGA TGTTCAAGTA CCTCCAGGAC
GACGGCTCCA CCGTCTCCGG CTGCTGGATC TACTGCGGCT CCTACACCAA GGACGGCAAC
CAGATGGCCC GCCGGGACGC CTCCGACCCC ACCGGCCTCG GCCTCTTCCC CAAGTGGTCC
TGGTGCTGGC CGGTGAACCG CCGGATCATC TACAACCGCG CCTCCGTCAA CCCGGCCGGT
GAGCCGTTTA ACCCCAAGCG CCCGGTCATC GCCTGGGACG CGCTGGAGAA GAAGTGGAAG
GGGGATGTCC CCGACGGTCC CTGGCCCCCC ATGAAGGACG ACAAGGAAGG GAAGTACCCC
TTCATCATGC TCCCCGAGGG ACATGGCCGC CTCTACGCCC TCGACATGAA GGACGGGCCG
TTCCCCGAGC ACTACGAGCC AGTGGAGAGT CCGGCCAGGA ACCTCCTCTC CAAGGTGCAG
AGCAACCCGG TCGTCAAGGT GCCGAAGAAC GTGTCGAGCG ATACCGCCAA GTTCCCCTAC
GTCGGCACCA CCTACCGGGT GACCGAGCAC TGGCAGGCCG GTGCCATGAC CAGGAGCCTC
CCGTGGCTCG TGGAACTGGT TCCCGACATG TTCGTGGAAC TCTCCGAGAC CCTGGCCCAG
CGGAAGGGGA TCAAGCAGGG GGACACGGTG AAGGTCACCA CCGAGCGGGG CTCCATCGAA
GCGGTGGCCC TTGTCACCAG CCGCCTCAAG CCCTTCAACG TCCAGGGGCG GATGATCGAG
CAGGTGGGGA TGCCGTGGCA CTTCGGCTAC GCGGGACTCG CCAAGGGGGA CAGCGGTAAC
GTCCTCACCC CCACCGTTGG GTGCGCCAAC ACCGGCATTC CGGAGTTCAA GGCGTTCCTC
TGCAACATCG AGAAAGGGGG TAAGCGGGCA TGA
|
|---|
| Protein sequence | MGISRRQFLQ RGALAGAAIA LSGKPGEASV DAPELRTKGL KTTTTICPFC SVGCGLIVHT
KDGRVVNAEG DPQHPINQGA LCPKGGALFQ IANNENRLQK VKYRAPGSDT WEEKSWDWAL
DRIAQRMKET RDKSFKKTEL NKKDNKEYVV NRTDGMAFFG GAGLDNEECY LWTKFARAMG
VGQLEHQARL UHSSTVAGLA ASFGRGAMTN HWIDLKNSDV ILAIGCNPAE NHPVSFKWIE
QALDSGAKLI AVDPRYTRTA SKSDIYAQIR PGTDIAFLGG IINFALQNNM IHEEYVREYT
NATFIVSEQF DFQDGMFCAF DDQEKTYDLK SWAYATTADG KPKRDMGMKD PKSVYQLLKN
HYRRYDVDTV CAITGTKKED YLKVAKAFCG TGRADKAGTI LYAMGITQST HGSQNVRAVA
LLQMLLGNIG IAGGGVNALR GESNVQGSTD YGLLFHILPG YLKSPEFDNV DLKAYNEKWT
PKTKDPKSAN WWGNTPKYIT SLLKAWYGEN ATAENDFCYD YLPKRSGNYS YVKIMEKMGK
GELEGLVCMG MNPAVGGPDS GKAREALGKL KWLVTADLWE TESSIFWKRP GVDPKSIQTE
VFMLPAASSI EKEGSISNSG RWAQWRYAAV HPLGDSRSDL HIIDEFYKRV KALYLKQGGA
FPEPITKLSW SYGTGHEPDV HMVAREINGY FTKDMTIVDK DKTLEFKKGD QVPMFKYLQD
DGSTVSGCWI YCGSYTKDGN QMARRDASDP TGLGLFPKWS WCWPVNRRII YNRASVNPAG
EPFNPKRPVI AWDALEKKWK GDVPDGPWPP MKDDKEGKYP FIMLPEGHGR LYALDMKDGP
FPEHYEPVES PARNLLSKVQ SNPVVKVPKN VSSDTAKFPY VGTTYRVTEH WQAGAMTRSL
PWLVELVPDM FVELSETLAQ RKGIKQGDTV KVTTERGSIE AVALVTSRLK PFNVQGRMIE
QVGMPWHFGY AGLAKGDSGN VLTPTVGCAN TGIPEFKAFL CNIEKGGKRA
|
|---|
| |