| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1057 |
|---|
| Symbol | |
|---|
| ID | 3739504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1173596 |
|---|
| End bp | 1175617 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637778335 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_384022 |
|---|
| Protein GI | 78222275 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0263803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACCGA AGCGCTTCCC CATCCGCCTC AAGCTCACCT TCGCCACCCT CATCCCCCTC
TTCGTGGCCT CGGTCATCTG CTGGGTCATC GGCATCTCCA TCATCAACTC CCGGATCGTG
ACCCAGGCCC AGGAAAAGGT CCGCACCGAC CTGAACTCGG CCCGGGCCGT CTACCAGAGC
GAACTTGACC ACATCCGGGA CGTGGTCAAG TTCACCGCCA CCAACCCCTT CACCTCCATG
ATTATCTCCC AGGGGGACCG CGCGACCCTC AACAACCTCC TCTCACCGCG GATGGCCAGC
GAAGGGCTCG ACTTCCTCAC CGCCGTGGAC CGGTCGGGCC GGGTCGTCTT CCGGGCCAGC
AACCACGGGG CCTTCGGCGA CAGCAAGATC AACGACCAGA TCGTCTCCCG GGCGTTGCAG
GGCGAGCACA TCGCCGGCAC CGAGGTGATC CCCCCCGGGG AACTGGTGAA AGAAGGGAAA
GAGCTGGCCG CCAAGGCGTC CATCCAGATC CTCCCCACCC TCCACGCCCG CCAGCGGGAC
GAGTCCGTGG AGCGCTCCGG CATGGCCATG GTGGTATCGG TGCCGGTGCG GGACCAGGCC
GGGACGGTCG CGGGTGCCCT CTACGGAGGA GTTCTCCTCA ACGGCAACAA CACCCTGGTG
GACCGGATCA AGAAGATCGT CTTCGAAGCG GTGAGCTACC AGGGGGAGGA CGTGGGAACC
GCCACCATCT TCCTGGGGGA CTTGCGGATA GCCACCAACG TCCTCCTTTC GCCGGAACGG
CGGGCCATCG GCACGAGGCT CTCGGAGGAG GTCTACAACC GGGTCCTCCT GGCCCGCGAG
AAATGGGTGG GACGGGCCTT TGTGGTGAAC GACTGGTACT ACTCCGCCTA CGAGCCGATC
CTGAACCTCC AGGGGAAGCC GGTGGGATCC CTCTACGTGG GGGTCATGGA ACGCCCCTTC
CTGGAGATGA AACGGGAGAT ATCCCTCATC TTCGGGGTGG TCCTCCTCTG CGGCTCCCTC
ATCGGGCTGG CCATTTCGAG CTTCATCGCC TCGCGCCTCG CCCGCCCCAT CAAGGAACTG
GAAAACGCAG CCCGCCGGAT CACCGCCGGC GAACGCGACA GTGCCATAAC CATCCAGACC
CGCGACGAGA TCGGCGACCT GGCAGGGGAG TTCGCCCAGA TGACCAGAAC CCTCGCCCAG
CGGGAGGAGG ACATCCGGAA GCTGAACCGG GACCTGGAGC AGAAGGTGCT GGACCGCACG
GCCCAGCTGG AGGAAAAGAA CCTCCTTCTT GTGAAGACCC AGGAGGACCT GGTCAGGGCG
GCAAAGCTGG CCGACATCGG CATGCTGGCC GCCGGCGTGG CCCACGAGAT CAACAACCCC
CTGGCGATCA TCCGGGGGAA CACGGAGCTG CTCCAGATGG CGATCCCCGA GGACGACCCG
AGCCGGGAGG AGGTGGACAC CATCGCCCAG CAGACGGGAC GGGTGGAGCG GATCGTGGGG
AGCCTCCTCA AGTTCGCCCG CCAGCAGAAG AAGGAACTGG GAACGGTGGA GGTCAACAGG
CTCCTGGATG AGATCCTCAA GCAGGTGGGG CACCAGATTC CCCTTGCCGG CATCGACATC
CGACGGGACT ACGCCGCCGA CATCCCCCTT CTGGAAGGAG ACGGCGACCA GCTCCGCCAG
GTCTTCACCA ACCTCATCCT CAACGCCATC CAGGCCATGA AGGAGGGGGG AACTCTCACG
GTGGGCACCT CCCGGGACAG CGAAGCCGGG ACCTGTACCG TTGCCGTGGA GGACACGGGG
GCCGGCATCC CCCCCGAAAA CCTCAGGAAC ATCTTCAGCC CCTTCTTCAC CACCCGCAAC
GACGGGACCG GCCTCGGCCT CGCGGTTTCC TACGGCATCG TCAGGGATCA CGGGGGGAAT
ATCCAGGTGG AGAGCACGGC GGGGACGGGG AGCACCTTCC GGGTGGTGCT GCCGCTGAAG
CAGGGGGGGA CGACTGACGT AAGCATCAGA CAAGGGACTT AA
|
|---|
| Protein sequence | MGPKRFPIRL KLTFATLIPL FVASVICWVI GISIINSRIV TQAQEKVRTD LNSARAVYQS
ELDHIRDVVK FTATNPFTSM IISQGDRATL NNLLSPRMAS EGLDFLTAVD RSGRVVFRAS
NHGAFGDSKI NDQIVSRALQ GEHIAGTEVI PPGELVKEGK ELAAKASIQI LPTLHARQRD
ESVERSGMAM VVSVPVRDQA GTVAGALYGG VLLNGNNTLV DRIKKIVFEA VSYQGEDVGT
ATIFLGDLRI ATNVLLSPER RAIGTRLSEE VYNRVLLARE KWVGRAFVVN DWYYSAYEPI
LNLQGKPVGS LYVGVMERPF LEMKREISLI FGVVLLCGSL IGLAISSFIA SRLARPIKEL
ENAARRITAG ERDSAITIQT RDEIGDLAGE FAQMTRTLAQ REEDIRKLNR DLEQKVLDRT
AQLEEKNLLL VKTQEDLVRA AKLADIGMLA AGVAHEINNP LAIIRGNTEL LQMAIPEDDP
SREEVDTIAQ QTGRVERIVG SLLKFARQQK KELGTVEVNR LLDEILKQVG HQIPLAGIDI
RRDYAADIPL LEGDGDQLRQ VFTNLILNAI QAMKEGGTLT VGTSRDSEAG TCTVAVEDTG
AGIPPENLRN IFSPFFTTRN DGTGLGLAVS YGIVRDHGGN IQVESTAGTG STFRVVLPLK
QGGTTDVSIR QGT
|
|---|
| |