Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_0987 |
Symbol | |
ID | 3738091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 1094700 |
End bp | 1096919 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637778266 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_383954 |
Protein GI | 78222207 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000757549 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.00276789 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGGGCGTTT ACTGTGTAAT GGCCGGCGGT TTCTTCTATT TCAGCCGATT TGGCCTTTTT TTGTCACCAT CGCAACACAT ACTCCTTCTT GCCGCTCTTG CCGCGGTTGT TTGCTACAAC CTGCTGCTTC AGTTTTCCCG CGACCGCCTT GCCCGTGGTT TCCGCCTTCT CAATTTCCTC CAGATTATCC TCGACCTTGT CCTGGTGTCG GTGCTGATCC ATACGAGCGG CGGAGCAGCC AGCTGGTTCT GGCCCGCATA CCTGTTCGTC ACCATAGAGG CATCCTTCCT CATCGAAGAT CGTCGTGAAG TCTGGCTCGT GGGTGGACTT GGCGGCCTTC TCTACGGAGC GGTGCTGGTG CTCGAGCATT TGAACATCGT TCCCTATGTG CGGATGCCCT TCGTGGGCTC CGAGCTCCAC CACGATCATC TGTATCTGCT CCTGACCTGG CTCTGGGTTT CGCTGCTCAA TGCTGCCATG GCGGCCATAG CCTCTTATTT CATGACGGTT ATCCGTCGGG AAACCGACGC GGTCCGTGAG GGGGAGGAGC GGCTCGCCAC ATTCCTCGAC ACGGCCAATG ACCTGATCCA CAGTGTGACC CCGGATGGTC GGCTCCTCTA TGTGAACGAA GCCTGGCAGC GGACCCTTGG CTATTCGGCT GAAGAGGCGG ACGCGGTTCC TTTCTTCGAT ATCCTCCATC CCGACAGCCG CGAGCAATGC TGCGCCGAAC TGCAGCGGGT TGTTTCCGGT GATGCCCTGA GCCCAATGGA GGCGGTTTTC ACGGCGAAGG ACGGCCGTTC AGTCATCGTG GAGGGGAGCC TCTCCTGCGC TCACGGAGGG GACGAATCCT CGGTCATCTG GAGCATCTGC CGCGACATCA CGGAACGGAA GCATGCCGAG GAGCAGCTCT ATCGGCTCGC CCACCACGAT ACCCTCACGG GGCTGCCGAA CCGGATTCTC TTCATGGATC GGCTCCAGCA GGCCAAGGCC CTGGCGAACC GCTACCGTTA CCAGGTTGCG GTCCTGTTCC TTGACCTCGA CCGCTTCAAG ATCATTAACG ACACCCTCGG GCATCCCGTG GGGGATCACC TTTTGCAGCA GGTGGCCCAC CGGATCGCGG GATGCGTGCG GGAAGTCGAT ACCGTGGCGC GCATCGGCGG CGACGAGTTC ACCATCATTC TCGTGAATGT CGACACCGTC GAGGACGTAA AGAGAATGGG GCAGAAGATT CTGAAGACGC TCGCCGCCCC CTTCAATATC GACACCCATG AGCTTTTCGT CACGGCGAGC ATCGGCATCT CCCTCTTTCC CTCCGATGGC GATAACCTGG ACCAACTGGT GAAGAAGGCC GATATCGCCA TGTATTGCGT GAAAGGGGAG GGGAGGAATA ACGTTCAGTT CTATTCTCCC CAGATGGACG CCAACGCCGA CAAGCGGCTA CTGCTGGAAA CGAGCCTGCG CAAGGCCCTC GACAACAGGG AGTTCAGGGT CTACTACCAG CCAAAGGTTG ACATCGTCTC CAAGAGAATT ACCGCCATGG AAGCACTGAT ACGATGGGAT CACCCAATTC TGGGGCTCGT TTCGCCCGGG GAGTTCATTC CCCTGGCCGA AGAGACGGGA CTCATCATCC CGATAGGTGA GTGGGTGCTC CGGGCCGCCT GCTTCCAGAA CTGCGAGTGG GTCAGGCAGG GAATCCCCCC CATGCGGGTG GCGGTGAATC TCTCCGGCTA TCAGTTCCAG CAGAAGAACC TTCTGGAAAC GATCCGGGGA ATCCTGGACG AAACCGGGCT TACCGCGGAT CTCCTGGAGC TTGAGATCAC CGAGAGCGTC ATCATGCAGA ACCCGGACTT CGCCGTGTCG GTGCTCAACC AGTTGAGGGA TCTCGGGGTC CACATCTCCA TCGACGATTT CGGCATCGGC TATTCTTCCC TGGCGCACCT GAAGCGGTTC TCGGTCAATA CGCTCAAGAT CGACAAGTCA TTCGTGCGGG ATGTGGAGAT CAACTCGGCC GACGCCGCCA TTGCCACGGC CATCATCGCC ATGGGGAACA GTCTCAACCT GAAGGTCATC GCCGAGGGGG TCGAGACGGA GGGGCAGCTA TCGTTTCTCT CCGACAACAA GTGCGACGAG GTGCAGGGAT ACCTCTTCAG CACCCCGATG CCGCCGGAGA AGGTCGCCGA GTTCATGCGG GAGCATGGGA GATCGGCCGG AAGGGGGTAG
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Protein sequence | MGVYCVMAGG FFYFSRFGLF LSPSQHILLL AALAAVVCYN LLLQFSRDRL ARGFRLLNFL QIILDLVLVS VLIHTSGGAA SWFWPAYLFV TIEASFLIED RREVWLVGGL GGLLYGAVLV LEHLNIVPYV RMPFVGSELH HDHLYLLLTW LWVSLLNAAM AAIASYFMTV IRRETDAVRE GEERLATFLD TANDLIHSVT PDGRLLYVNE AWQRTLGYSA EEADAVPFFD ILHPDSREQC CAELQRVVSG DALSPMEAVF TAKDGRSVIV EGSLSCAHGG DESSVIWSIC RDITERKHAE EQLYRLAHHD TLTGLPNRIL FMDRLQQAKA LANRYRYQVA VLFLDLDRFK IINDTLGHPV GDHLLQQVAH RIAGCVREVD TVARIGGDEF TIILVNVDTV EDVKRMGQKI LKTLAAPFNI DTHELFVTAS IGISLFPSDG DNLDQLVKKA DIAMYCVKGE GRNNVQFYSP QMDANADKRL LLETSLRKAL DNREFRVYYQ PKVDIVSKRI TAMEALIRWD HPILGLVSPG EFIPLAEETG LIIPIGEWVL RAACFQNCEW VRQGIPPMRV AVNLSGYQFQ QKNLLETIRG ILDETGLTAD LLELEITESV IMQNPDFAVS VLNQLRDLGV HISIDDFGIG YSSLAHLKRF SVNTLKIDKS FVRDVEINSA DAAIATAIIA MGNSLNLKVI AEGVETEGQL SFLSDNKCDE VQGYLFSTPM PPEKVAEFMR EHGRSAGRG
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