| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0957 |
|---|
| Symbol | |
|---|
| ID | 3738527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1065296 |
|---|
| End bp | 1067197 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637778236 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_383924 |
|---|
| Protein GI | 78222177 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATC TCAAGCGCTA CAATGACGGC CTCGTCAAGC TCGACCTCTG GATCAGGAGA
CTCCTGACCA TGGGGGCCCC TGATCTCATC GACACCGCCC TCTGCGACGG GGCGTGCGAC
ATCGTCCGTG CCGAAACCGG TGTCCTGACG GCCATCAATC GCCAGGCCGG TCTCCTTACC
TTTACGGCGG CTTCCGGGGC CTGGAACCAG ATGATGAAAG GGGTCACGGT TCCCCTGCGC
AACGGCAACA TCTGCGCGGC TCTGGCCGCC TGCGGAACCC CCCTCAGGGT CGACCGCCTT
TCGCTCTTTT GCCGGGAAAG CTGCGAGCTC TTCCAGGTGG TGGAGATGAA TACGGCCCTG
CTGGTGCCCA TCTTCGACGA GGGAAGGGTG GCTGCCTGTA TCGCCGCGTT CCGCATGGAC
AAACCCTTCG ACCAGGTCGA CGAGCAACTG CTCCAGCAGT ATGCCCACTC TGCCTCGGCG
GTGCTGCGCA ATTTCCGCCT CATGGAAGAT CTCAGGCGCC ACGCCGCCAT GCTGGAAGAG
GAGGTGGCGG AGCGTTCCCG GGCCGAGGAG CGGATTCGCC AGATGGCCTA TTACGATTCC
CTCACCGGGC TTCCCAACCG GCGACTCTTC AATGACCGTC TCCGGCAGTC CCTCGCCCTG
GCCCAGCGCC ACAAGAGGCC CTTGGCGGTC ATGTTCCTGG ACCTGGACCG CTTCAAGCTC
ATCAATGATA CCCTCGGCCA CGCCGTGGGA GACAGGCTCC TTATGGCGGT GGCAAAGCGC
CTTAGAAACT GCTGTCGCCG CGAGGGGGAC ACGGTGGCGC GCCAGGGAGG CGACGAGTTC
ATCATCAACC TATCGGCCAT CTCGGATGTG AAGGACGCCT TCACGGTGGC CCAGAAGATC
ATCGACGTCT TCAGAACACC CTTCGTCATT GACGGATATG AGTTGTTCAT CACCACGAGC
ATCGGGATCA GCGTCTATCC CCACGACGGA CGCTCCGGCG ATGCCCTGGT GAAAAACGCC
GACGTTGCCA TGTACCGCGC CAAAGAGCAG GGACGCAACA ACTGTCAGCT GTTTGCCCCT
GAGATGAATG CCCGGGCCTT TGAGCGGCTC TCTCTGGAGA ACGACATGCG GCGGGCGCTG
GAGCGGGACG AATTCGTCCT CCACTATCAG CCCAAGGTGA ACGTGGAGCA TGGCCAGATC
GCCTGCATGG AGGCCCTGGT CCGCTGGCAG CATCCCAGCA TGGGGCTTGT TCCTCCGTCC
CGCTTCATTC CCCTGGCCGA GGAGACCGGG CTCATCGTTC CCTTGGGAGA GTGGGTCTTG
CGAACCGCCT GCCAGCAGAA CCGGGCATGG CAGGATGCCG GCTATCCCAC CATGCAGGTG
GCGGTAAATC TCTCACCCCG CCAGCTCCGG CAGGGAGACC TGTCGGAGAC GGTGGCGCGG
GTCCTGGCGG AGACCGGGCT TGCCCCGGGG TGGCTCGTCA TCGAGGTTAC CGAAAGCATC
CTCATGGACG ATGCCGAGGA GACGATCAGA ACCTTCCGGC GGCTGGATAG AATGGGGGTC
CGGATTTCCA TCGACGATTT CGGCACTGGT TATTCGTCGC TTCACTATCT GAAAAAGTTT
CCGGTCCATA CCCTCAAGAT CGACCGTTCC TTCGTACGTG AGATCGCCTC CAACCCGGAC
GATGAGGCCA TTGCCGGCGC TGTCATCAGC ATGGCAAAAG GGCTCAACCT GGGAGTGGTT
GCGGAGGGGG TGGAAACCGT GGAGCAGATG GAAGTGCTCA GGGCACTGAA CTGCCGGTAC
ATGCAGGGAT TCCTCTTCAG CGAGCCCGCT CCCGCCGAGC AGTTCACCCC GGTGCTCGGT
CACGCGGCCA CGCCGTATCT CAACTTCGGC AAGTGGTGTT GA
|
|---|
| Protein sequence | MADLKRYNDG LVKLDLWIRR LLTMGAPDLI DTALCDGACD IVRAETGVLT AINRQAGLLT
FTAASGAWNQ MMKGVTVPLR NGNICAALAA CGTPLRVDRL SLFCRESCEL FQVVEMNTAL
LVPIFDEGRV AACIAAFRMD KPFDQVDEQL LQQYAHSASA VLRNFRLMED LRRHAAMLEE
EVAERSRAEE RIRQMAYYDS LTGLPNRRLF NDRLRQSLAL AQRHKRPLAV MFLDLDRFKL
INDTLGHAVG DRLLMAVAKR LRNCCRREGD TVARQGGDEF IINLSAISDV KDAFTVAQKI
IDVFRTPFVI DGYELFITTS IGISVYPHDG RSGDALVKNA DVAMYRAKEQ GRNNCQLFAP
EMNARAFERL SLENDMRRAL ERDEFVLHYQ PKVNVEHGQI ACMEALVRWQ HPSMGLVPPS
RFIPLAEETG LIVPLGEWVL RTACQQNRAW QDAGYPTMQV AVNLSPRQLR QGDLSETVAR
VLAETGLAPG WLVIEVTESI LMDDAEETIR TFRRLDRMGV RISIDDFGTG YSSLHYLKKF
PVHTLKIDRS FVREIASNPD DEAIAGAVIS MAKGLNLGVV AEGVETVEQM EVLRALNCRY
MQGFLFSEPA PAEQFTPVLG HAATPYLNFG KWC
|
|---|
| |