Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_0891 |
Symbol | |
ID | 3738850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 981935 |
End bp | 984211 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637778170 |
Product | DNA topoisomerase I |
Protein accession | YP_383858 |
Protein GI | 78222111 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000570299 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 1.1513e-16 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGCCACAAC ACCTCGTCAT CGTCGAATCT CCGGCCAAGG CCAAGACCAT CGAGAAATTT CTCGGCAAGG ACTTTCGGGT CATGGCTTCC TACGGCCACG TACGCGCCCT CCCCAGCAAG CAGGGGTCCG TGGATGTCGC CAACGATTTC GAACCCAAAT ATGCCATTCT CCCCGAGAGC AAGCGGCACA TCGACGCCAT CAAGAAGGAG CTGAAGGAGA GCGACATCCT GCTCTTGGCC ACTGACCCCG ACCGCGAAGG GGAGGCGATC TCCTGGCACC TGCTGGCGGC CCTCGGCATG GACAAAAAGA AAAACGCCGT GCCGGTGAAG CGGGTCGTGT TCCACGAGAT CACCAAGGAC GCCATCGTCC ACGCCGTGGA AAACCCCCGG GACATCTCCC TGGAGTTGGT GGACGCCCAG CAGGCCCGCT CCATCCTTGA CTACCTGGTC GGCTTCAACC TCTCCCCTTT CCTCTGGAAA AAAATCCGCT ACGGCCTCTC TGCCGGACGG GTCCAGTCCG TGGCCCTGCG GCTCATCTGC GAGCGGGAGA AGGAGATCAA GGCTTTCCAG GAACAGGAGT ACTGGACCAT CGGCGCGGAG CTGGGCACCG GCAAGGGGCA GAAGTTCTCC GCCAACCTAG TGGAGGCCGA GGGGAAGAAA CTCGGCAAGT TCGATATCCC CGACGGCACG GCGGCCGACC GGCTCGTGAA GGCCCTGGAG AACGGTGCCT ACACCGTCGA CAAAGTGGCG AAGAGCGAGC GCAAACGGAC CCCAGCGCCG CCGTTCACCA CCTCCACCCT CCAGCAGGAG GCGGCAAGAA AGCTCGGCTT CTCGGCCAAG AAGACCATGT CCACGGCCCA GAAGCTCTAC GAAGGGGTCG CCGTGGGGGA CGAGGGGCTT GTCGGTCTCA TCACCTACAT GCGTACCGAC AGCGTGGTGC TGTCGAACCA GGCCCTCCAG GAGGCCCACG AGGTCATCAC CTCCCTCTAC GGGAAGGAGT ACGCCCTCGC CAAGCCCCGC TTTTACAAGA ACAAGGCGAA GAACGCCCAG GAGGCCCACG AGGCGGTCCG CCCCACCTCC ATCGCCCGCA CCCCGGTCGA GGTGAAGAAG TACCTCTCCT CCGACCAGTT CAAACTCTAC GATCTCATCT GGAAGCGGAC CGTGGCCTGC CAGATGGCCG AGGCGCTTCT GGATCAGACC TCTGTCGACA TCGGCGCCGG CGAGGGCTAT CGTTTCCGTG CCGCCGGCAC CGTGATCCGC TTCCCCGGCT TCATGAAGCT CTACATCGAG GGAGTCGACG ACCAGGCCGA GGAGAAGGAA GGGACTCTGC CTCCCCTCAC GGAAGGGGAA CTCCTGAAGC TCCAGAAGCT CGTTCCGGAG CAGCATTTCA CCCAGCCCCC ACCGCGGTAC ACCGAGGCGA GCCTCGTGAA GACCCTGGAG GAGTACGGTA TTGGCCGTCC CTCCACCTAC GCCTCCATCA TGAACACGCT CCTGGAGCGG AAATACGCCC GCCTCGACAG CAAGCGCTTC GTTCCCGAGG ATGTGGGGAT GGTGGTGAAC GATCTCCTCA CCAACCACTT CACCCAGTAC GTGGATTACA ATTTCACCGC CAGCCTCGAA GAGGAGTTGG ACCGGGTCTC CCGGGGTGAG AAGCAGTGGA AGCCCCTCCT TCATGACTTC TGGGGCCCCT TTAGTTCCCT CCTGAAACAG AAAGAGGGGG AGGTGAGCAA GGCGGACCTC ACCACCGAGG CCACCGACGA ACTCTGCCCC GACTGCGGCA AGCCGCTGGT GGTGAAGCTT GGGAAGCGGG GGAAGTTCAT CGCCTGCTCC GGCTACCAGG AAGGGTGCAC CTATACCCGC AACATCGCCC AGGGGGAGCA GCAGGAGCCG GCAGAACCGG TCTTCTCCGA GGAGAAGTGC GACAAGTGCG GCAGCCCCAT GCTCATCAAG GATGGCCGCT TCGGAAAGTA CCTGGCCTGC TCCGCCTATC CCGCCTGCAA GAACATCCAG CCCCTCGTAA AGCCCAAGGG GACCGGCCAC ACGTGCCCCG AGTGCAAGGA AGGGGAGCTG ACCGAGAAGA AGTCCCGCTA CGGCAAGATG TTCTACTCCT GCAACCGCTA CCCCCAGTGC AAGTTCGCCC TCTGGGATCC CCCCCAGCCG GGGCCGTGCC CCAAATGTGG CTTCCCGCTC CTGGTGAAAA AGGTCTACAA GCGGGAAGGG GAGTTCCTCA AGTGCCCGAA AGAGGGGTGT GACTACCGGA CCGAAGGGAA GAAGTAG
|
Protein sequence | MPQHLVIVES PAKAKTIEKF LGKDFRVMAS YGHVRALPSK QGSVDVANDF EPKYAILPES KRHIDAIKKE LKESDILLLA TDPDREGEAI SWHLLAALGM DKKKNAVPVK RVVFHEITKD AIVHAVENPR DISLELVDAQ QARSILDYLV GFNLSPFLWK KIRYGLSAGR VQSVALRLIC EREKEIKAFQ EQEYWTIGAE LGTGKGQKFS ANLVEAEGKK LGKFDIPDGT AADRLVKALE NGAYTVDKVA KSERKRTPAP PFTTSTLQQE AARKLGFSAK KTMSTAQKLY EGVAVGDEGL VGLITYMRTD SVVLSNQALQ EAHEVITSLY GKEYALAKPR FYKNKAKNAQ EAHEAVRPTS IARTPVEVKK YLSSDQFKLY DLIWKRTVAC QMAEALLDQT SVDIGAGEGY RFRAAGTVIR FPGFMKLYIE GVDDQAEEKE GTLPPLTEGE LLKLQKLVPE QHFTQPPPRY TEASLVKTLE EYGIGRPSTY ASIMNTLLER KYARLDSKRF VPEDVGMVVN DLLTNHFTQY VDYNFTASLE EELDRVSRGE KQWKPLLHDF WGPFSSLLKQ KEGEVSKADL TTEATDELCP DCGKPLVVKL GKRGKFIACS GYQEGCTYTR NIAQGEQQEP AEPVFSEEKC DKCGSPMLIK DGRFGKYLAC SAYPACKNIQ PLVKPKGTGH TCPECKEGEL TEKKSRYGKM FYSCNRYPQC KFALWDPPQP GPCPKCGFPL LVKKVYKREG EFLKCPKEGC DYRTEGKK
|
| |