| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0619 |
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| Symbol | rpoB |
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| ID | 3739242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 687276 |
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| End bp | 691388 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637777897 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_383586 |
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| Protein GI | 78221839 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000000000000502856 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTATT CAATTGCGAA TAACCAGCTT CTACGCCAGA ATTTCGCCAA GATCAAGAAA
ATCATTGACA TCCCCAACCT TATTGATATT CAAAAAAATT CCTATAAGCG TTTCCTGCAA
ATTGACACCC CCCCCGAAGC ACGCAAGAAC AGCGGGCTCG AAGCTGTATT CAAGAGTGTT
TTCCCAATTA AGGACTTTAG CGATACTGCT TCGCTTGAGT ATGTTTCCTA TAGCCTCGGC
ACACCGAAGT ACGATGTTGA AGAATGCCAC CAACGCGGGA TGACCTTCGC CGCCCCCATG
AAGGTGAAGG TGCGCCTCGT CGTTTGGGAC GTGAACAAGG ATACTGGCGT CCGTTCTATT
CGGGATATCA AGGAGCAGGA GGTCTACTTC GGCGAGATCC CGCTCATGAC CGAGAACGGC
ACGTTCATCA TAAACGGTAC CGAACGTGTT ATCGTGAGCC AGCTTCACCG CTCTCCCGGT
GTTTTCTACG ACCATGACAA GGGCAAGACC CATTCCAGCG GCAAGGTCCT CTATTCCGCC
CGAGTGATCC CTTACCGTGG CTCTTGGCTC GATTTCGAGT TCGACCACAA GGACATACTC
TATGTCCGGA TCGACCGTCG CCGCAAGATG CCGGCAACGG TCCTCCTTAA GGCCCTTGGC
AACAGTGCGG AGGAGCTTCT CAATTTTTAT TACCGGAGTG AGGAGATCGG GCTCGATGGG
GAGCGGATGT GGAAGAAGGC CGACGCCGAG CTTCTGACAA CTCAGAAAAC CTCTTCCGAC
ATCGTTGATT CCAAGACCGG TGAAGTCATC ATCAAGGCGA ACAGAAAGTT CACCAAGGCG
GCAATCCGCA AGATGACCGA GCACGGAATC ACCGAGATTC CCATTAAAGC CGAAGAGGTC
TGTGGAAAGT ACGCTTCTAC CGATATTGTT GACCCTGCCA CTGGCGAAGT GCTGGTAGAG
TGCAACGAGG AGATCTCCCA GGCTAAGCTT GACGAGATCA AGGCACGGGG CATTTCGGAG
TTCAAGGTTC TTTTCATCGA CAACCTCCAT GTGACATCCT CGCTGCGGGA CACACTGCTC
GTCGATAAGA TAAACACTAC TGACGACGCG CTCATTGAGA TCTATCGTCG CCTGCGTCCT
GGTGATCCCC CGACCCTCAA GAGTGCCCAG GCACTTTTCG ACAACCTCTT TTTCAATGCA
GAACGCTACG ATCTCTCAGC CGTGGGACGG CTCAAGCTTA ACTACAAGCT GGGACTCGGC
GTCCCCCTTG ACTGCCAGGT GCTCACCAAG GAAGATATCC TTGAGGTGGT CCGGTATCTC
ATTGATCTGA AAAACGGCCG GGGGACCATC GATGATATCG ACCATCTGGG CAACCGGCGG
GTGCGGGCTG TGGGCGAGCT GCTGGAAAAC CAGTACCGCA TCGGTCTCGT CCGCATGGAG
CGGGCCATCA AGGAGCGGAT GAGCCTACAG GAAGTCGAGA ACCTGATGCC CCACGACCTG
ATCAACTCCA AGCCGGTTTC GGCCGTGGTC AAGGAGTTTT TCGGCTCATC GCAGCTCTCG
CAGTTCATGG ACCAGACAAA CCCGCTTTCC GAAGTTACCC ACAAGCGGCG TCTCTCTGCC
CTCGGACCAG GCGGCCTCAC CCGCGAACGG GCCGGCTTCG AAGTCCGTGA CGTTCACCCC
ACCCACTACG GCCGGGTCTG CCCGATCGAG ACTCCTGAAG GTCCGAACAT CGGTCTTATT
GCATCGCTTT CCACCTACGC CCGGATCAAC GAGCACGGCT TTGTGGAAAC GCCGTACCGG
ATCGTGAGCG AGGGGAAAGT CACCGCCGAG GTGAAGTTCT TCTCCGCCCT TGAGGAGGAG
GGGCATGCCA TTGCCCAGGC CAATGCCGAG ATGGATGCCG ATGGCCGCTT TGTGAACGAT
TACGTCTCTG CCCGTAAGTC GGGCGAGTTC CTCCTCGTGC ATCGGGACGA GCTGGAGCTT
ATGGACGTGG CACCGATGCA GCTTGTTTCC GTTGCAGCAT CGCTTATTCC GTTTCTTGAG
AACGACGACG CCAACCGCGC CCTCATGGGC TCCAACATGC AACGTCAGGC AGTACCGCTC
CTGAAAGCCG ATTCTCCGTT GGTCGGCACC GGCATGGAGC GGGTTGTCGC CAAGGATTCG
GGTGTTTCGG TTGTGGCGCG CCACACCGGC GTCGTCGAAT CGGTAGATGC GTCACGCATC
GTCGTCAAGA TCGACGAAGA CGAGTATGAC GAGACCGGCA CCGGTGTCGA TATCTATAAC
CTCATCAAGT TTGCCCGCTC CAACCAGAAC ACGTGCATTA ACCAGCGGCC GGTGGTCAAG
GTTGGCGATC ATGTGAAACG GGGCGATGTC ATTGCTGATG GCCCGTCCAC CGACATGGGG
GAACTGGCTC TGGGGCAGAA CGTTGTCGTC GCCTTCATGC CCTGGGGTGG CTACAACTTC
GAAGACTCGA TCCTTATTTC CGAGAAACTC ACCAAGGACG ACCGCTATAC CTCGATCCAT
ATCGAGGAGT TCGAGTGCGT TGCCCGTGAC ACCAAGCTCG GCAAGGAAGA GATAACCTCG
GATATCCCGA ATCTGGGCGA GGAAACCCTC AAGGACCTGG ACGAGTCCGG CATCATCCGG
ATTGGCGCTG AAGTCAAACC GGGTGACATC ATGGTCGGGA AGATCACGCC GAAGGGCGAA
ACCCAGCTCT CGCCGGAGGA AAAGCTTCTC CGGGCCATCT TCGGCGAAAA AGCTGGAGAC
GTTCGCGACA CCTCCCTGCG TGTTCCGCCG GGGGTCGAGG GGACAGTCAT CGGCGCCAAA
GTCTTTTCCC GTAAAGGGAA TGACAAAGAC TCCCGTACCG AGATGATCGA ACGGATGGAG
GAGGAAAAGC TTCGCAAGGA CGAGCAGGAC GAGATCCGGA TTATCCGTGA TTCTGCTGTC
GGCAAGCTGA AAAGGCTTCT GGTCGGCAAG ACCGCTGCCG TGAAGGTGGA GGACAAAAAC
GGCAAGACGG TTATCGCCAA GGATGCCGCC ATCACGGAAG AGGCCCTCAC GGCAATCCCC
CTCGATCGTT GGGATGAGAT TTCGGTCAGT GGCGGGGAGG GGGTCGAGGA GAAGGTTGCT
GCGATCCTTG CCACGCTCCA ACAGCAGATT GATATCATAA AATATGTCTT TGACGATAAG
GTCCAGAAGC TGAAACGAGG CGATGACCTT CCCCCGGGCG TTATCAAGAT GGTCAAGGTT
TACATTGCCA TCAAGCGCAA GCTTCAGGTC GGCGACAAGA TGGCAGGCCG CCACGGTAAC
AAGGGTGTTG TGTCCCGTAT CCTCCCCGAG GAAGACATGC CGTACATGGA GGATGGCCGT
CCCGTCGAGA TCGTGCTGAA CCCCCTGGGT GTTCCTTCCC GTATGAACGT GGGGCAGATC
CTCGAAACCC ATCTGGGATG GGCTGCCAAG GGAATCGGCT GGAAGATCGA GGAAATGCTT
GAGAAGCATT CTCCGTCTGC CACGATCAAG GAGTATCTCC AGAAGGTTTA CGGCTCCAAG
GAAATGAATG CGTTCCTTGA CTCTCTCAAC GAGGAGGAAC TGATAAACGT CGCCAAGCGT
CTCCAACGCG GAGTTCCGAT GGCGTCGCCC GTCTTTGAGG GGGCTTCGGA GGAGCAGATT
CGAAGCATGC TCGACAAGGC CGGTTTCGAC GAGACCGCCC AGGTCAGACT TTTCGACGGC
AAGACCGGAG AACCCTTCAA GCACAAGGTC ACGGTCGGGG TCATGTACGT CCTCAAGCTC
CATCACCTGG TTGACGACAA GATCCACGCC CGGTCCATCG GCCCCTACAG CCTCGTGACC
CAACAGCCTC TGGGCGGCAA GGCTCAGTTT GGTGGCCAGC GTCTCGGTGA AATGGAGGTC
TGGGCCATGG AAGCATACGG CGCCGCCTAT GCTCTCCAGG AATTCCTGAC GGTGAAATCC
GATGACGTTG CAGGCCGTAC GCGCATGTAC GAGGCCATTG TCAAAGGAAA GCATACCCTC
GAGCCGGGAC TCCCGGAGTC GTTCAACGTC CTGATAAAGG AACTCCAGTC GCTGTGTCTC
GATGTGGAAC TCCTGGAAGG CGACGAGGAT TAG
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| Protein sequence | MAYSIANNQL LRQNFAKIKK IIDIPNLIDI QKNSYKRFLQ IDTPPEARKN SGLEAVFKSV
FPIKDFSDTA SLEYVSYSLG TPKYDVEECH QRGMTFAAPM KVKVRLVVWD VNKDTGVRSI
RDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFYDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL YVRIDRRRKM PATVLLKALG NSAEELLNFY YRSEEIGLDG
ERMWKKADAE LLTTQKTSSD IVDSKTGEVI IKANRKFTKA AIRKMTEHGI TEIPIKAEEV
CGKYASTDIV DPATGEVLVE CNEEISQAKL DEIKARGISE FKVLFIDNLH VTSSLRDTLL
VDKINTTDDA LIEIYRRLRP GDPPTLKSAQ ALFDNLFFNA ERYDLSAVGR LKLNYKLGLG
VPLDCQVLTK EDILEVVRYL IDLKNGRGTI DDIDHLGNRR VRAVGELLEN QYRIGLVRME
RAIKERMSLQ EVENLMPHDL INSKPVSAVV KEFFGSSQLS QFMDQTNPLS EVTHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRVCPIE TPEGPNIGLI ASLSTYARIN EHGFVETPYR
IVSEGKVTAE VKFFSALEEE GHAIAQANAE MDADGRFVND YVSARKSGEF LLVHRDELEL
MDVAPMQLVS VAASLIPFLE NDDANRALMG SNMQRQAVPL LKADSPLVGT GMERVVAKDS
GVSVVARHTG VVESVDASRI VVKIDEDEYD ETGTGVDIYN LIKFARSNQN TCINQRPVVK
VGDHVKRGDV IADGPSTDMG ELALGQNVVV AFMPWGGYNF EDSILISEKL TKDDRYTSIH
IEEFECVARD TKLGKEEITS DIPNLGEETL KDLDESGIIR IGAEVKPGDI MVGKITPKGE
TQLSPEEKLL RAIFGEKAGD VRDTSLRVPP GVEGTVIGAK VFSRKGNDKD SRTEMIERME
EEKLRKDEQD EIRIIRDSAV GKLKRLLVGK TAAVKVEDKN GKTVIAKDAA ITEEALTAIP
LDRWDEISVS GGEGVEEKVA AILATLQQQI DIIKYVFDDK VQKLKRGDDL PPGVIKMVKV
YIAIKRKLQV GDKMAGRHGN KGVVSRILPE EDMPYMEDGR PVEIVLNPLG VPSRMNVGQI
LETHLGWAAK GIGWKIEEML EKHSPSATIK EYLQKVYGSK EMNAFLDSLN EEELINVAKR
LQRGVPMASP VFEGASEEQI RSMLDKAGFD ETAQVRLFDG KTGEPFKHKV TVGVMYVLKL
HHLVDDKIHA RSIGPYSLVT QQPLGGKAQF GGQRLGEMEV WAMEAYGAAY ALQEFLTVKS
DDVAGRTRMY EAIVKGKHTL EPGLPESFNV LIKELQSLCL DVELLEGDED
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