| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0358 |
|---|
| Symbol | |
|---|
| ID | 3739724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 402798 |
|---|
| End bp | 404156 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637777631 |
|---|
| Product | multi anti extrusion protein MatE |
|---|
| Protein accession | YP_383326 |
|---|
| Protein GI | 78221579 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000000377442 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGAA GAGGATTTAC GACACGACAC TTCAGGGAGC GGAAAAAGCG GATCTCCATC
CGCCGCAATG TCATGAACCT GTCGCTTCCG GTCCTCCTCT CGTCCCTCTT CCAGCGTCTC
GTGGCCATCG TCGACATCTT CCTCGTGGGG GGGCTCGGCG CAGCGGCCAT CGCGGCCACG
GGGCTCGGCC AGCTCCTCGT CTTCGTGACC ATGACGGTCT TCTGGGGGCT TGCCACTGGC
ACCACGGTGG TGATCGCTCA CCTCTGGGGA GCGGGACAGC GCCGGGAAGC CCGCCGGGCC
GCCTTTGCCG CCTGCCTCGC CTGTGCCGCC ATGACGGCGG CGGCCTCGAC CTTGGGGTGG
TTCTTCAGCG GCGATCTGGC CGCCTTTCTC GGCGCGAAGG ATGACGTCCT CCACCTGGCC
GCCGGCTATA CCCGGCTGGT CTTTCTCTAT CTGGCCTTCA CCACGGGGCT CAACATCCTC
TCGGCCATCA TGCACGGCAC CGGCAACACC CGGACCCCCA TGACCGCCAT TCTCCTTGTG
AATGTCCTCC ACGTGCTCAT GGCCTGGCCC CTCATCTACG GCAAGCTGGG TCTCCCCGCC
ATGGGGGTGA CCGGCGCGGC CATCGCCATC AACGCCTCCG AGGCCATCGG CTTTTTCTAC
CTCCTGATCC AGGCCATGAG ACTCCGCTAT ATCCGGGTGG GGCGCCCCGA CACGGGGCTC
TTCCAGCGCA TCTGGCGGGT GGGGTGGCCC GTGGCCCTGG AGCGGGTCGC CCAGCAGGGA
GGGCAGCTCT TCTACTCGAA ATTCATCATC AGCTACGGCA CCGCCGCCTA CGCGGCGCAC
CAGATCGGGC TCTCCATCGA GTCCCTCTCC TTCATGCCCG GGGCCGGCAT GGGGATCGCC
GCGGCCACCC TCATGGGGCA GGCCCTCGGA GCAAAAAAAT ACCGCCGGGC GCGGATCAGC
CACCGTGAGG CGCTGCGTCT GGCGGTCATG GTGATGGGGA CCATGGCGGC CGTCTTCCTG
ACGCTGCCCG GGCCCCTCAT CGGACTCTTC ACCCATGACC CGGCGGTCAT CGAGAAGGGA
ATCGTCTTCC TGCGGCTGGT GGCCTTCGCC CAGGTCCCCC TGGCCCTCTC CTTCGTCTAC
GCCGGGAGCC TGCGGGGGAC CGGCGACACC TTCTACGTCT TCCTGGTGAC CCTCGGCACC
ATGTGGGGGG TGCGGGTCTT CCTCTCATGG GTGGCGGCCG ACTGGCTCCA CCTCTCCCTC
TACGCCGTCT GGGGGGTCTT CGTCATCGAC TGGTACGCGA GGGCCGTCGC CTTCTGGTGG
CGGTACCGGC AGCGGGACCT CCACGCGGTA GTCATCTGA
|
|---|
| Protein sequence | MTGRGFTTRH FRERKKRISI RRNVMNLSLP VLLSSLFQRL VAIVDIFLVG GLGAAAIAAT
GLGQLLVFVT MTVFWGLATG TTVVIAHLWG AGQRREARRA AFAACLACAA MTAAASTLGW
FFSGDLAAFL GAKDDVLHLA AGYTRLVFLY LAFTTGLNIL SAIMHGTGNT RTPMTAILLV
NVLHVLMAWP LIYGKLGLPA MGVTGAAIAI NASEAIGFFY LLIQAMRLRY IRVGRPDTGL
FQRIWRVGWP VALERVAQQG GQLFYSKFII SYGTAAYAAH QIGLSIESLS FMPGAGMGIA
AATLMGQALG AKKYRRARIS HREALRLAVM VMGTMAAVFL TLPGPLIGLF THDPAVIEKG
IVFLRLVAFA QVPLALSFVY AGSLRGTGDT FYVFLVTLGT MWGVRVFLSW VAADWLHLSL
YAVWGVFVID WYARAVAFWW RYRQRDLHAV VI
|
|---|
| |