| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0356 |
|---|
| Symbol | |
|---|
| ID | 3739722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 398451 |
|---|
| End bp | 401999 |
|---|
| Gene Length | 3549 bp |
|---|
| Protein Length | 1182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637777629 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_383324 |
|---|
| Protein GI | 78221577 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000270654 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.856676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTG CCCTGGAGCC AGCACCGACT CAACCGGTAC GACGCCGTAC CCTTGCGTGC
ATCCTGGCAT GCGTTGCGCT CTTCATCCTC TTCGTTCCCG TCGCCTTCAA GCTCTATCTG
ACCTCGCCCC AGGCGGCCAG CCATCTCTCC CGCCTTCTCA CGGACTCCCT GCGCTCCCCC
GTGACCGTTG CCGCCTTGGA AACCCGCGGC GGTACGGTCG TTATCCGGGG TCTTTCAGTG
GCCAATCCCC CCGGTTTCTC CGCCGCCCCT CTGGCTGTCG TCGACACCCT TGCCATTACT
CCACGCTGGT TTGGGCTCCT CTGGGGCGAC CGCAGGTTCA GTCGCATCGA AATCCGCGGA
GCGAGGGTTG TCGCGGAAAA AAACAGGGGC GGGGTTTGGA ACGTGGTGGA ACTGCAGCGT
CGGTTGCCGA AGAAGAGATC TCCCGCCAGG GAGACGCGGA TCGACGAACT GATACTCCGT
TCCTGGTCGA TGACTGTGGA GGGACGGAGC GTTGCGGGCA TTGCATTCCG GATCAGGGAC
CTCGCCACGC GGGGGTCGAC CGATTCACGT CTGGATCTGG CCTTCGCAGA CGGCGCAGGC
AACCGCTACC GGATCGAGGG GAACGCCCGT CCCGGTCCGG CGTCCGCCTT TGACCTGATG
CTCACGGCCC CTTCCCTGAC CCTCGCCCCC CTTGCTGATG TGATCAAGCG CCATGAGCTG
TTCCTGGAGC AGGGGACCGG TGCCCTGCGG CTCAGGGTAG CGCTTGAGGG GGGAGTACTC
AGGGCGGACG GGATCATGGA CTTTGGCAAG ATCGCTGTCA GGGGTGGCAA GGGGACTCTC
CTTCTTGCCG GTCGCGTGAA CCTTCGGGGG GACTATGATC CCCGGCGGGA CGAGGCCCAC
GTTACAAGCC TCGCCATAAC CCTCGCGGAT CTCGCAACGG CCCGGGTTGC TGCTAAGGTG
AACCGGGTGC GGAAGGAGCG GGCTTTCTCT GCCGATGTCA GCCTGGACGA GGTGGATCTG
AAGCGCCTTT CCCCCCTGGT CGCAGCCGTG ACAGGGCGCC CTCTTTCCCT GGCCGGGCAG
GTGGGAAGCC GGAATCTCCA TGTCGCCGGT GACGGTGCCC GGGGGATGAT CGCCATTGAG
GGGGGGGGCG TTGCCCGGGA CGTGGTGGTT TCCCTTGGCG GCCGCCTCCT TGTCAAGGGG
GGGGAAGGGA TAGTTTCCCT GGCGTCGGCT CCCGGGGGGA TCCTTGCCAA GGGAACATTC
TCCACCCCGC GAAATACGGA AGATGCCCTT GTCGAGAAGA TTGAACTTCC CTTCGCCCTG
CTCCTGACAC CACGTTTCAA GCCCCTGGAT GTCCAGGTGC CGTCACTGGC GGCCCGCATC
ATGGGGGTGC CGCTCACCGG CCATCTCAGT TTCAGGCCTG GTTCGCAACG CCCCTTGCTT
GCGTCGCTCC ATGTTCCATC AACGTCCCTC GTGCTCTTTT CGCCCTATCT GTCACGCTAC
GGCCTTCGCC CCACCAGCGG CACAACCTCT CTGGCTCTCG ACCTCCAGGG GAAGGGGGCG
GCGGATTTCG ATGGTGAAGC TGCCATTCGG GTTGATTCCC TGGCGGCTGA AGTGCAGGGG
AAGCGGGCCA TCCTCGGCAC AGGGGAGGTT CACTCCCGCT TCAAACGGAG CGGAGAGCAT
CTGTCAGCCA CGGGTACGGC TCGGCTCGAC GGGGCGGAAT TCAACGGGAA CGGGGGGGGA
ATCAGCACCA CCTTCTCCTT TGCAGACCGG AGCCTTACCC TGGAAGATGT CAGGGGGAGT
TTCGCCGCAA CGATGGTCTC CGCCGGCCGC GCGACCCTGA CGCTTCCGGC CGTGAAGGCG
GGAGCTGCTC CGGAGCCTCG TCCCCTCTTG CTCCAGTTGG CGGGCGGAGC AGTTCGTCGC
GGCGATGTCG AGGCAACGGG CCTTTCGGCC TCGCTCCGGG GCAGTCTCCA TGCCGATCCC
AAGGGCCGCT GGTTCGAGGG GGGGGGAGCC GTTTTCGCCG AACGGCTAGC CCTCCGGGGA
GCCCCGGTGG GGGCGCCGTC GCTTCGGTTC ACCCTGTCGC GGAGTGCAGG GGAGGTAGAC
CTTGGCGGGA AGCTCCTGGA CGGAACCATG AGCGGTCAGG CATCCTTCGA TCCCCGCTCG
CCTGCAACGG GCGCATCCTT TTCTCTGGGG GTTAAGGACG GAAAGCTGGC GCTCGCGAGG
ACGCTTCTTC CCGGAAAGCA GCCGGTAGTC CCGGCCGATG GTTTGGTGTC CGGGACGGTC
GCCGGTTCAT TTGCCCGCGC CGGCGGGTTG TCGGCCCGGA TCGATCTCCG TGCTGACGGC
GTCGCCCTGG CAGGGGAGGG GGGGAAGCGC CTTCTCTCGG GCGGGGGAGC ACGTATCGCC
GGGCGGGTGG AGGGGGAGCG GGTCGTGCTG CAGGAGAGTT CCGCCACCTT CGGAGAGGGG
GCCACCCTTC GGCTGCAGGG GGAGATGGAG CGGGTTCTCT CGCCCCAGCG GGCCGGGCGT
CTTACCTTCT CCCTTCCCGC AACTCCCCTT GACCGCCTCA TTGATCCGGT AGTGAACGCA
CTTCCCCGCT TCATCCAGGA GGCGACCGTC GCGGGGAGCG TGGCAGCCGA GGGGACCGCC
GTGCTGAAAG GGAAGGGGGG GGGCGTTGAC GGTACTCTCA CCTTCGACGG GGTGAGCCTC
GACGTCCCGT CCCAGAAGCT CCTGGTGAGC GGCGTGCACG GCACCGTTCC CTTCTCCCTT
GAGTCCTCTC CTGGCACGTA CCGGCGAGCC CGGGACGAAG TGGGATTCAC CAAGGAGAAT
TTTACGCGAC TTCTGGAGCA GTTCCGACAG ACGCCGACGG CTGATCGGAC CCTGACGGTC
GGCAAACTCC GTTTCGGCCC CCTGGAACTG GGAGAGACGA CGGCATTCCT GCGGAGCGCC
AATGGTGTCG TGGAGCTGAC CTCCCTGCGT TCGGGCCTTT CGGGAGGGGA GGTGCTCGGC
AGGGGGTTCG TTGCCATGAA GGGGGGGCTT GCCTACGGCT GCGATATCCT GGTGTACGAC
CTGAGCCTGC GGCGTTTCTG CGATGCCATT CCGAAAATCA AGGGGTATGT CTCGGGCCGC
CTGGACGGAA TCGCGAGCCT CAAGGGCGCG GGAAAAGGGA TAGCAGGGCT CGACGGCATT
ACCGATCTCT GGGTGCGGAA TACGAAGGGA GAGAAGATGC TCCTCTCCAA GGAGTTTCTC
CAGCGGCTCG CCGGCAAGAA GCTGAAAGGC TTCTTCTTCC GGGACGATCG CCCGTTCGAC
CGCGGCGAGG TGAGTGCCTA CCTGGAGGAG GGCTATCTTA CCTTCACGAC CCTGGACATT
TCCCATACGA ACCTGCTGGG AATGCGGGAT CTGAGTGTCA CCGTGGCGCC GGTTCAGAAC
CGGATCGCCA TTGACCACCT CTTCAGCGCC TTGAAAGAGG CGGCGACCAG GGGGAAGGCG
GTCTCGCGGG GTGACGAGGC CCCCGCGGCC GAGCCCCCTG TCCAGACCGA CTTCCAGTGG
CGTGACTGA
|
|---|
| Protein sequence | MTPALEPAPT QPVRRRTLAC ILACVALFIL FVPVAFKLYL TSPQAASHLS RLLTDSLRSP
VTVAALETRG GTVVIRGLSV ANPPGFSAAP LAVVDTLAIT PRWFGLLWGD RRFSRIEIRG
ARVVAEKNRG GVWNVVELQR RLPKKRSPAR ETRIDELILR SWSMTVEGRS VAGIAFRIRD
LATRGSTDSR LDLAFADGAG NRYRIEGNAR PGPASAFDLM LTAPSLTLAP LADVIKRHEL
FLEQGTGALR LRVALEGGVL RADGIMDFGK IAVRGGKGTL LLAGRVNLRG DYDPRRDEAH
VTSLAITLAD LATARVAAKV NRVRKERAFS ADVSLDEVDL KRLSPLVAAV TGRPLSLAGQ
VGSRNLHVAG DGARGMIAIE GGGVARDVVV SLGGRLLVKG GEGIVSLASA PGGILAKGTF
STPRNTEDAL VEKIELPFAL LLTPRFKPLD VQVPSLAARI MGVPLTGHLS FRPGSQRPLL
ASLHVPSTSL VLFSPYLSRY GLRPTSGTTS LALDLQGKGA ADFDGEAAIR VDSLAAEVQG
KRAILGTGEV HSRFKRSGEH LSATGTARLD GAEFNGNGGG ISTTFSFADR SLTLEDVRGS
FAATMVSAGR ATLTLPAVKA GAAPEPRPLL LQLAGGAVRR GDVEATGLSA SLRGSLHADP
KGRWFEGGGA VFAERLALRG APVGAPSLRF TLSRSAGEVD LGGKLLDGTM SGQASFDPRS
PATGASFSLG VKDGKLALAR TLLPGKQPVV PADGLVSGTV AGSFARAGGL SARIDLRADG
VALAGEGGKR LLSGGGARIA GRVEGERVVL QESSATFGEG ATLRLQGEME RVLSPQRAGR
LTFSLPATPL DRLIDPVVNA LPRFIQEATV AGSVAAEGTA VLKGKGGGVD GTLTFDGVSL
DVPSQKLLVS GVHGTVPFSL ESSPGTYRRA RDEVGFTKEN FTRLLEQFRQ TPTADRTLTV
GKLRFGPLEL GETTAFLRSA NGVVELTSLR SGLSGGEVLG RGFVAMKGGL AYGCDILVYD
LSLRRFCDAI PKIKGYVSGR LDGIASLKGA GKGIAGLDGI TDLWVRNTKG EKMLLSKEFL
QRLAGKKLKG FFFRDDRPFD RGEVSAYLEE GYLTFTTLDI SHTNLLGMRD LSVTVAPVQN
RIAIDHLFSA LKEAATRGKA VSRGDEAPAA EPPVQTDFQW RD
|
|---|
| |